1 Response_reg#1
6-119 aa · 114 aa · 21.1% of protein
Raw token
Response_reg:6:2.25e-32:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS01760
Response regulator, unclassified
Hungatella effluvii · GCF_034124705
ClassRRTypeunclassifiedLength540 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS01760Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length540 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage184 / 540 aa (34.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa540 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
448-488 aa · 41 aa · 7.6% of protein
Raw token
HTH_AraC:448:0.00000000481:488:41:423 HTH_AraC#3
509-537 aa · 29 aa · 5.4% of protein
Raw token
HTH_AraC:509:0.00000552:537:29:42- Raw architecture: Response_reg:6:2.25e-32:119:114:111#HTH_AraC:448:0.00000000481:488:41:42#HTH_AraC:509:0.00000552:537:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000005.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span213012-216428Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000005.1::G00009Context members
U0E26_RS01755U0E26_RS01760
Partner locus tags
U0E26_RS01755U0E26_RS01760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002603525.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PD66Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PD66_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS01760Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000005.1Sequence record reported by the local genomic context database.
Genomic interval214 806-216 428 nt1 623 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span213 012-216 428 ntGCF_034124705::NZ_JAWYAM010000005.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000005.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000005.1All displayed genes belong to this local TCS context.
Neighborhood span213 012-216 428 nt3 417 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
213 012 nt216 428 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS01755GCF_034124705#U0E26_RS01755
HKClassic
213 012-214 805 nt · Reverse (-)
U0E26_RS01760GCF_034124705#U0E26_RS01760
RRunclassifiedCurrent focus
214 806-216 428 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS18675Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0089401
Simplified PFAM architecture for RROC_0089401
PFAM domain coverage: 328 / 540 aa (60.7%)
1 aa540 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-118] | GGDEF_2[163-299] | HTH_18[460-537]
- Domain count: 3
- Matched identifier: RROC_0089401
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; GGDEF_2 163-299 ; GGDEF_2 163-299 ; HTH_18 460-537 ; HTH_18 460-537
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS18675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key