1 HAMP#1
308-377 aa · 70 aa · 11.3% of protein
Raw token
HAMP:308:0.000000446:377:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS00975
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength619 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS00975Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length619 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 619 aa (39.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa619 aa
Domain-by-domain annotation3 items
2 His_kinase#2
392-470 aa · 79 aa · 12.8% of protein
Raw token
His_kinase:392:1.1e-25:470:80:803 HATPase_c#3
493-590 aa · 98 aa · 15.8% of protein
Raw token
HATPase_c:493:0.00000792:590:99:109- Raw architecture: HAMP:308:0.000000446:377:71:69#His_kinase:392:1.1e-25:470:80:80#HATPase_c:493:0.00000792:590:99:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000005.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20082-23460Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000005.1::G00005Context members
U0E26_RS00975U0E26_RS00980
Partner locus tags
U0E26_RS00975U0E26_RS00980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002603688.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS00975Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000005.1Sequence record reported by the local genomic context database.
Genomic interval20 082-21 941 nt1 860 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span20 082-23 460 ntGCF_034124705::NZ_JAWYAM010000005.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000005.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000005.1All displayed genes belong to this local TCS context.
Neighborhood span20 082-23 460 nt3 379 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 082 nt23 460 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS00975GCF_034124705#U0E26_RS00975
HKClassicCurrent focus
20 082-21 941 nt · Forward (+)
U0E26_RS00980GCF_034124705#U0E26_RS00980
RRunclassified
21 934-23 460 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS19485Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_0975065
Simplified PFAM architecture for HKOC_0975065
PFAM domain coverage: 77 / 619 aa (12.4%)
1 aa619 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[392-468]
- Domain count: 1
- Matched identifier: HKOC_0975065
- Positioned domains: His_kinase 392-468
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS19485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key