1 dCache_1#1
43-267 aa · 225 aa · 39.2% of protein
Raw token
dCache_1:43:0.0000149:267:236:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS01390
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength574 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS01390Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length574 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage473 / 574 aa (82.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa574 aa
Domain-by-domain annotation4 items
2 HAMP#2
286-354 aa · 69 aa · 12.0% of protein
Raw token
HAMP:286:0.00000000000203:354:69:693 His_kinase#3
369-448 aa · 80 aa · 13.9% of protein
Raw token
His_kinase:369:2.67e-29:448:80:804 HATPase_c#4
467-565 aa · 99 aa · 17.2% of protein
Raw token
HATPase_c:467:0.000000453:565:108:109- Raw architecture: dCache_1:43:0.0000149:267:236:195#HAMP:286:0.00000000000203:354:69:69#His_kinase:369:2.67e-29:448:80:80#HATPase_c:467:0.000000453:565:108:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000005.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span127058-130320Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000005.1::G00007Context members
U0E26_RS01390U0E26_RS01395
Partner locus tags
U0E26_RS01390U0E26_RS01395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025529874.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DN79Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DN79_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS01390Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000005.1Sequence record reported by the local genomic context database.
Genomic interval127 058-128 782 nt1 725 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span127 058-130 320 ntGCF_034124705::NZ_JAWYAM010000005.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000005.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000005.1All displayed genes belong to this local TCS context.
Neighborhood span127 058-130 320 nt3 263 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
127 058 nt130 320 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS01390GCF_034124705#U0E26_RS01390
HKClassicCurrent focus
127 058-128 782 nt · Reverse (-)
U0E26_RS01395GCF_034124705#U0E26_RS01395
RRunclassified
128 785-130 320 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS10935Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1193989
Simplified PFAM architecture for HKOC_1193989
PFAM domain coverage: 130 / 574 aa (22.6%)
1 aa574 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[303-353] | His_kinase[369-447]
- Domain count: 2
- Matched identifier: HKOC_1193989
- Positioned domains: HAMP 303-353 ; His_kinase 369-447
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS10935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key