1 Response_reg#1
6-121 aa · 116 aa · 43.4% of protein
Raw token
Response_reg:6:6.53e-25:121:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS00315
Response regulator Spo0A family
Hungatella effluvii · GCF_034124705
ClassRRTypeSpo0ALength267 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034124705#U0E26_RS00315Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length267 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage220 / 267 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa267 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
157-260 aa · 104 aa · 39.0% of protein
Raw token
Spo0A_C:157:1.29e-64:260:104:104- Raw architecture: Response_reg:6:6.53e-25:121:116:111#Spo0A_C:157:1.29e-64:260:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034124705::NZ_JAWYAM010000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span89090-89893Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000001.1::G00004Context members
U0E26_RS00315
Partner locus tags
U0E26_RS00315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002600991.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7H9Y5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7H9Y5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS00315Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000001.1Sequence record reported by the local genomic context database.
Genomic interval89 090-89 893 nt804 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span89 090-89 893 ntGCF_034124705::NZ_JAWYAM010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000001.1All displayed genes belong to this local TCS context.
Neighborhood span89 090-89 893 nt804 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 090 nt89 893 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E26_RS00315GCF_034124705#U0E26_RS00315
RRSpo0ACurrent focus
89 090-89 893 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS05880Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0622859
Simplified PFAM architecture for RROC_0622859
PFAM domain coverage: 219 / 267 aa (82.0%)
1 aa267 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-120] | Spo0A_C[157-260]
- Domain count: 2
- Matched identifier: RROC_0622859
- Positioned domains: Response_reg 6-120 ; Response_reg 6-120 ; Spo0A_C 157-260 ; Spo0A_C 157-260
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS05880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key