1 Response_reg#1
4-116 aa · 113 aa · 44.5% of protein
Raw token
Response_reg:4:3.46e-35:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS16040
Response regulator, unclassified
Hungatella effluvii · GCF_034124445
ClassRRTypeunclassifiedLength254 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS16040Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length254 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 254 aa (74.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa254 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
159-201 aa · 43 aa · 16.9% of protein
Raw token
HTH_AraC:159:0.00000000569:201:43:423 HTH_AraC#3
216-249 aa · 34 aa · 13.4% of protein
Raw token
HTH_AraC:216:0.00000196:249:34:42- Raw architecture: Response_reg:4:3.46e-35:116:113:111#HTH_AraC:159:0.00000000569:201:43:42#HTH_AraC:216:0.00000196:249:34:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000038.1::G00071
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113078-115589Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000038.1::G00071Context members
U0C54_RS16040U0C54_RS16045
Partner locus tags
U0C54_RS16040U0C54_RS16045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002604222.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P7I7Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P7I7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS16040Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000038.1Sequence record reported by the local genomic context database.
Genomic interval113 078-113 842 nt765 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span113 078-115 589 ntGCF_034124445::NZ_JAWYBC010000038.1::G00071
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000038.1::G00071Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000038.1All displayed genes belong to this local TCS context.
Neighborhood span113 078-115 589 nt2 512 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 078 nt115 589 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS16040GCF_034124445#U0C54_RS16040
RRunclassifiedCurrent focus
113 078-113 842 nt · Reverse (-)
U0C54_RS16045GCF_034124445#U0C54_RS16045
HKClassic
113 844-115 589 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034131825#U0F24_RS18155Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0660556
Simplified PFAM architecture for RROC_0660556
PFAM domain coverage: 192 / 259 aa (74.1%)
1 aa259 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[9-121] | HTH_18[178-256]
- Domain count: 2
- Matched identifier: RROC_0660556
- Positioned domains: Response_reg 9-121 ; HTH_18 178-256
Cluster members and taxonomy
Representative gene: GCF_034131825#U0F24_RS18155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key