1 Response_reg#1
4-116 aa · 113 aa · 21.9% of protein
Raw token
Response_reg:4:3.5e-24:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS10405
Response regulator, unclassified
Hungatella effluvii · GCF_034124445
ClassRRTypeunclassifiedLength515 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS10405Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length515 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 515 aa (37.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa515 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
420-462 aa · 43 aa · 8.3% of protein
Raw token
HTH_AraC:420:0.000000163:462:43:423 HTH_AraC#3
477-512 aa · 36 aa · 7.0% of protein
Raw token
HTH_AraC:477:0.0000000593:512:36:42- Raw architecture: Response_reg:4:3.5e-24:116:113:111#HTH_AraC:420:0.000000163:462:43:42#HTH_AraC:477:0.0000000593:512:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000019.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span137397-140702Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000019.1::G00057Context members
U0C54_RS10400U0C54_RS10405
Partner locus tags
U0C54_RS10400U0C54_RS10405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029467485.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DTM0Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DTM0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS10405Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000019.1Sequence record reported by the local genomic context database.
Genomic interval139 155-140 702 nt1 548 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span137 397-140 702 ntGCF_034124445::NZ_JAWYBC010000019.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000019.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000019.1All displayed genes belong to this local TCS context.
Neighborhood span137 397-140 702 nt3 306 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
137 397 nt140 702 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS10400GCF_034124445#U0C54_RS10400
HKClassic
137 397-139 145 nt · Reverse (-)
U0C54_RS10405GCF_034124445#U0C54_RS10405
RRunclassifiedCurrent focus
139 155-140 702 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS01625Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0136574
Simplified PFAM architecture for RROC_0136574
PFAM domain coverage: 192 / 515 aa (37.3%)
1 aa515 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[434-512]
- Domain count: 2
- Matched identifier: RROC_0136574
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 434-512 ; HTH_18 434-512
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS01625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key