1 Response_reg#1
21-134 aa · 114 aa · 21.2% of protein
Raw token
Response_reg:21:5.97e-30:134:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS09445
Response regulator, unclassified
Hungatella effluvii · GCF_034124445
ClassRRTypeunclassifiedLength537 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS09445Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length537 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 537 aa (28.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa537 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
497-535 aa · 39 aa · 7.3% of protein
Raw token
HTH_AraC:497:0.0000000582:535:39:42- Raw architecture: Response_reg:21:5.97e-30:134:114:111#HTH_AraC:497:0.0000000582:535:39:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000016.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span212296-215737Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000016.1::G00051Context members
U0C54_RS09445U0C54_RS09450
Partner locus tags
U0C54_RS09445U0C54_RS09450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029466174.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DH47Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DH47_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS09445Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000016.1Sequence record reported by the local genomic context database.
Genomic interval212 296-213 909 nt1 614 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span212 296-215 737 ntGCF_034124445::NZ_JAWYBC010000016.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000016.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000016.1All displayed genes belong to this local TCS context.
Neighborhood span212 296-215 737 nt3 442 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
212 296 nt215 737 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS09445GCF_034124445#U0C54_RS09445
RRunclassifiedCurrent focus
212 296-213 909 nt · Forward (+)
U0C54_RS09450GCF_034124445#U0C54_RS09450
HKClassic
213 923-215 737 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS21005Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0096713
Simplified PFAM architecture for RROC_0096713
PFAM domain coverage: 314 / 537 aa (58.5%)
1 aa537 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[21-133] | GGDEF_2[178-300] | HTH_18[458-535]
- Domain count: 3
- Matched identifier: RROC_0096713
- Positioned domains: Response_reg 21-133 ; Response_reg 21-133 ; GGDEF_2 178-300 ; GGDEF_2 178-300 ; HTH_18 458-535 ; HTH_18 458-535
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS21005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key