1 Response_reg#1
20-129 aa · 110 aa · 43.8% of protein
Raw token
Response_reg:20:2.95e-33:129:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS09345
Response regulator OmpR family
Hungatella effluvii · GCF_034124445
ClassRRTypeOmpRLength251 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS09345Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length251 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 251 aa (72.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa251 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
174-244 aa · 71 aa · 28.3% of protein
Raw token
Trans_reg_C:174:0.00000000000000124:244:72:77- Raw architecture: Response_reg:20:2.95e-33:129:111:111#Trans_reg_C:174:0.00000000000000124:244:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000016.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span189309-191495Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000016.1::G00050Context members
U0C54_RS09345U0C54_RS09350
Partner locus tags
U0C54_RS09345U0C54_RS09350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243006284.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS09345Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000016.1Sequence record reported by the local genomic context database.
Genomic interval189 309-190 064 nt756 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span189 309-191 495 ntGCF_034124445::NZ_JAWYBC010000016.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000016.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000016.1All displayed genes belong to this local TCS context.
Neighborhood span189 309-191 495 nt2 187 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
189 309 nt191 495 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS09345GCF_034124445#U0C54_RS09345
RROmpRCurrent focus
189 309-190 064 nt · Forward (+)
U0C54_RS09350GCF_034124445#U0C54_RS09350
HKClassic
190 068-191 495 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS21105Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0713829
Simplified PFAM architecture for RROC_0713829
PFAM domain coverage: 184 / 251 aa (73.3%)
1 aa251 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[20-129] | Trans_reg_C[171-244]
- Domain count: 2
- Matched identifier: RROC_0713829
- Positioned domains: Response_reg 20-129 ; Response_reg 20-129 ; Trans_reg_C 171-244 ; Trans_reg_C 171-244
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS21105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key