1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:4.84e-37:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS07375
Response regulator OmpR family
Hungatella effluvii · GCF_034124445
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS07375Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-219 aa · 75 aa · 33.6% of protein
Raw token
Trans_reg_C:145:6.47e-24:219:75:77- Raw architecture: Response_reg:4:4.84e-37:112:111:111#Trans_reg_C:145:6.47e-24:219:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000014.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span188426-190542Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000014.1::G00040Context members
U0C54_RS07375U0C54_RS07380
Partner locus tags
U0C54_RS07375U0C54_RS07380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002600171.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7H4S5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7H4S5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS07375Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000014.1Sequence record reported by the local genomic context database.
Genomic interval188 426-189 097 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span188 426-190 542 ntGCF_034124445::NZ_JAWYBC010000014.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000014.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000014.1All displayed genes belong to this local TCS context.
Neighborhood span188 426-190 542 nt2 117 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
188 426 nt190 542 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS07375GCF_034124445#U0C54_RS07375
RROmpRCurrent focus
188 426-189 097 nt · Forward (+)
U0C54_RS07380GCF_034124445#U0C54_RS07380
HKClassic
189 094-190 542 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS01805Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1589130
Simplified PFAM architecture for RROC_1589130
PFAM domain coverage: 184 / 223 aa (82.5%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-219]
- Domain count: 2
- Matched identifier: RROC_1589130
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-219 ; Trans_reg_C 145-219
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS01805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key