1 Response_reg#1
7-120 aa · 114 aa · 20.3% of protein
Raw token
Response_reg:7:4.77e-26:120:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS07230
Response regulator, PleD_VieA family
Hungatella effluvii · GCF_034124445
ClassRRTypePleD_VieALength562 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_034124445#U0C54_RS07230Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regGGDEFEAL
Protein length562 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage435 / 562 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEF,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa562 aa
Domain-by-domain annotation3 items
2 GGDEF#2
137-220 aa · 84 aa · 14.9% of protein
Raw token
GGDEF:137:0.00000000000000315:220:86:1603 EAL#3
303-539 aa · 237 aa · 42.2% of protein
Raw token
EAL:303:1.03e-72:539:237:235- Raw architecture: Response_reg:7:4.77e-26:120:116:111#GGDEF:137:0.00000000000000315:220:86:160#EAL:303:1.03e-72:539:237:235
- Domain description: 1 Response_reg,1 GGDEF,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_034124445::NZ_JAWYBC010000014.1::G00038
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span150249-155431Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000014.1::G00038Context members
U0C54_RS07220U0C54_RS07225U0C54_RS07230
Partner locus tags
U0C54_RS07220U0C54_RS07225U0C54_RS07230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029466084.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DJW5Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DJW5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS07230Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000014.1Sequence record reported by the local genomic context database.
Genomic interval153 743-155 431 nt1 689 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span150 249-155 431 ntGCF_034124445::NZ_JAWYBC010000014.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000014.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000014.1All displayed genes belong to this local TCS context.
Neighborhood span150 249-155 431 nt5 183 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
150 249 nt155 431 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
U0C54_RS07220GCF_034124445#U0C54_RS07220
HKClassic
150 249-151 982 nt · Forward (+)
U0C54_RS07225GCF_034124445#U0C54_RS07225
RRunclassified
151 972-153 513 nt · Forward (+)
U0C54_RS07230GCF_034124445#U0C54_RS07230
RRPleD_VieACurrent focus
153 743-155 431 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS16215Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF + EAL3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0058142
Simplified PFAM architecture for RROC_0058142
PFAM domain coverage: 491 / 562 aa (87.4%)
1 aa562 aa
Response_regGGDEFEAL
- Simplified architecture: Response_reg + GGDEF + EAL
- Raw architecture: Response_reg[7-119] | GGDEF[136-278] | EAL[305-539]
- Domain count: 3
- Matched identifier: RROC_0058142
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; GGDEF 136-278 ; GGDEF 136-278 ; EAL 305-539 ; EAL 305-539
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS16215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key