1 Response_reg#1
5-113 aa · 109 aa · 26.7% of protein
Raw token
Response_reg:5:1.19e-25:113:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS07055
Response regulator, unclassified
Hungatella effluvii · GCF_034124445
ClassRRTypeunclassifiedLength409 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS07055Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length409 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage181 / 409 aa (44.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa409 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
314-354 aa · 41 aa · 10.0% of protein
Raw token
HTH_AraC:314:0.0000204:354:41:423 HTH_AraC#3
375-405 aa · 31 aa · 7.6% of protein
Raw token
HTH_AraC:375:0.00000000201:405:31:42- Raw architecture: Response_reg:5:1.19e-25:113:109:111#HTH_AraC:314:0.0000204:354:41:42#HTH_AraC:375:0.00000000201:405:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000014.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span112208-115122Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000014.1::G00036Context members
U0C54_RS07055U0C54_RS07060
Partner locus tags
U0C54_RS07055U0C54_RS07060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025529338.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS07055Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000014.1Sequence record reported by the local genomic context database.
Genomic interval112 208-113 437 nt1 230 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span112 208-115 122 ntGCF_034124445::NZ_JAWYBC010000014.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000014.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000014.1All displayed genes belong to this local TCS context.
Neighborhood span112 208-115 122 nt2 915 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
112 208 nt115 122 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS07055GCF_034124445#U0C54_RS07055
RRunclassifiedCurrent focus
112 208-113 437 nt · Forward (+)
U0C54_RS07060GCF_034124445#U0C54_RS07060
HKClassic
113 446-115 122 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS16025Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0371074
Simplified PFAM architecture for RROC_0371074
PFAM domain coverage: 190 / 409 aa (46.5%)
1 aa409 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[327-405]
- Domain count: 2
- Matched identifier: RROC_0371074
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; HTH_18 327-405 ; HTH_18 327-405
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS16025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key