1 Response_reg#1
5-112 aa · 108 aa · 21.1% of protein
Raw token
Response_reg:5:4.07e-22:112:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS06230
Response regulator, unclassified
Hungatella effluvii · GCF_034124445
ClassRRTypeunclassifiedLength512 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS06230Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length512 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 512 aa (28.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa512 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
471-508 aa · 38 aa · 7.4% of protein
Raw token
HTH_AraC:471:0.00000000453:508:38:42- Raw architecture: Response_reg:5:4.07e-22:112:108:111#HTH_AraC:471:0.00000000453:508:38:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000008.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span274819-278171Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000008.1::G00030Context members
U0C54_RS06225U0C54_RS06230
Partner locus tags
U0C54_RS06225U0C54_RS06230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029467705.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DHS6Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DHS6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS06230Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000008.1Sequence record reported by the local genomic context database.
Genomic interval276 633-278 171 nt1 539 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span274 819-278 171 ntGCF_034124445::NZ_JAWYBC010000008.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000008.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000008.1All displayed genes belong to this local TCS context.
Neighborhood span274 819-278 171 nt3 353 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
274 819 nt278 171 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS06225GCF_034124445#U0C54_RS06225
HKClassic
274 819-276 648 nt · Forward (+)
U0C54_RS06230GCF_034124445#U0C54_RS06230
RRunclassifiedCurrent focus
276 633-278 171 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS18940Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0143504
Simplified PFAM architecture for RROC_0143504
PFAM domain coverage: 187 / 512 aa (36.5%)
1 aa512 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-114] | HTH_18[432-508]
- Domain count: 2
- Matched identifier: RROC_0143504
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; HTH_18 432-508 ; HTH_18 432-508
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS18940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key