1 HAMP#1
310-379 aa · 70 aa · 11.5% of protein
Raw token
HAMP:310:0.0000000000984:379:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS06225
Histidine kinase, Classic
Hungatella effluvii · GCF_034124445
ClassHKTypeClassicLength609 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS06225Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length609 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage253 / 609 aa (41.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa609 aa
Domain-by-domain annotation3 items
2 His_kinase#2
394-472 aa · 79 aa · 13.0% of protein
Raw token
His_kinase:394:1.38e-26:472:80:803 HATPase_c#3
495-598 aa · 104 aa · 17.1% of protein
Raw token
HATPase_c:495:0.0000000000000127:598:104:109- Raw architecture: HAMP:310:0.0000000000984:379:70:69#His_kinase:394:1.38e-26:472:80:80#HATPase_c:495:0.0000000000000127:598:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000008.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span274819-278171Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000008.1::G00030Context members
U0C54_RS06225U0C54_RS06230
Partner locus tags
U0C54_RS06225U0C54_RS06230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029467704.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DHV8Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DHV8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS06225Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000008.1Sequence record reported by the local genomic context database.
Genomic interval274 819-276 648 nt1 830 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span274 819-278 171 ntGCF_034124445::NZ_JAWYBC010000008.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000008.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000008.1All displayed genes belong to this local TCS context.
Neighborhood span274 819-278 171 nt3 353 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
274 819 nt278 171 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS06225GCF_034124445#U0C54_RS06225
HKClassicCurrent focus
274 819-276 648 nt · Forward (+)
U0C54_RS06230GCF_034124445#U0C54_RS06230
RRunclassified
276 633-278 171 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS18945Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1009673
Simplified PFAM architecture for HKOC_1009673
PFAM domain coverage: 236 / 609 aa (38.8%)
1 aa609 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[327-377] | His_kinase[394-472] | HATPase_c[492-597]
- Domain count: 3
- Matched identifier: HKOC_1009673
- Positioned domains: HAMP 327-377 ; His_kinase 394-472 ; HATPase_c 492-597
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS18945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key