1 HisKA#1
189-256 aa · 68 aa · 16.4% of protein
Raw token
HisKA:189:1.8e-16:256:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS05240
Histidine kinase, Classic
Hungatella effluvii · GCF_034124445
ClassHKTypeClassicLength415 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS05240Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length415 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 415 aa (43.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa415 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
304-415 aa · 112 aa · 27.0% of protein
Raw token
HATPase_c:304:5.64e-32:415:112:109- Raw architecture: HisKA:189:1.8e-16:256:68:64#HATPase_c:304:5.64e-32:415:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000008.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59046-60964Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000008.1::G00026Context members
U0C54_RS05235U0C54_RS05240
Partner locus tags
U0C54_RS05235U0C54_RS05240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002603895.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P5C9Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P5C9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS05240Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000008.1Sequence record reported by the local genomic context database.
Genomic interval59 717-60 964 nt1 248 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 046-60 964 ntGCF_034124445::NZ_JAWYBC010000008.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000008.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000008.1All displayed genes belong to this local TCS context.
Neighborhood span59 046-60 964 nt1 919 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 046 nt60 964 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS05235GCF_034124445#U0C54_RS05235
RROmpR
59 046-59 723 nt · Forward (+)
U0C54_RS05240GCF_034124445#U0C54_RS05240
HKClassicCurrent focus
59 717-60 964 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS20560Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2310880
Simplified PFAM architecture for HKOC_2310880
PFAM domain coverage: 178 / 415 aa (42.9%)
1 aa415 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[189-256] | HATPase_c[305-414]
- Domain count: 2
- Matched identifier: HKOC_2310880
- Positioned domains: HisKA 189-256 ; HATPase_c 305-414
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS20560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key