1 sCache_like#1
64-131 aa · 68 aa · 14.7% of protein
Raw token
sCache_like:64:0.0000327:131:68:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS05195
Histidine kinase, Classic
Hungatella effluvii · GCF_034124445
ClassHKTypeClassicLength462 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS05195Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length462 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 462 aa (52.8%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa462 aa
Domain-by-domain annotation3 items
2 HisKA#2
242-307 aa · 66 aa · 14.3% of protein
Raw token
HisKA:242:4.67e-18:307:66:643 HATPase_c#3
352-461 aa · 110 aa · 23.8% of protein
Raw token
HATPase_c:352:3.09e-34:461:110:109- Raw architecture: sCache_like:64:0.0000327:131:68:114#HisKA:242:4.67e-18:307:66:64#HATPase_c:352:3.09e-34:461:110:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000008.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49013-51095Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000008.1::G00025Context members
U0C54_RS05195U0C54_RS05200
Partner locus tags
U0C54_RS05195U0C54_RS05200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025529275.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DP25Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DP25_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS05195Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000008.1Sequence record reported by the local genomic context database.
Genomic interval49 013-50 401 nt1 389 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span49 013-51 095 ntGCF_034124445::NZ_JAWYBC010000008.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000008.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000008.1All displayed genes belong to this local TCS context.
Neighborhood span49 013-51 095 nt2 083 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 013 nt51 095 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS05195GCF_034124445#U0C54_RS05195
HKClassicCurrent focus
49 013-50 401 nt · Reverse (-)
U0C54_RS05200GCF_034124445#U0C54_RS05200
RROmpR
50 403-51 095 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS09060Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1810564
Simplified PFAM architecture for HKOC_1810564
PFAM domain coverage: 174 / 462 aa (37.7%)
1 aa462 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[242-307] | HATPase_c[354-461]
- Domain count: 2
- Matched identifier: HKOC_1810564
- Positioned domains: HisKA 242-307 ; HATPase_c 354-461
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS09060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key