1 Response_reg#1
10-121 aa · 112 aa · 20.9% of protein
Raw token
Response_reg:10:1.46e-32:121:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS04290
Response regulator, unclassified
Hungatella effluvii · GCF_034124445
ClassRRTypeunclassifiedLength535 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034124445#U0C54_RS04290Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length535 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 535 aa (28.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa535 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
490-527 aa · 38 aa · 7.1% of protein
Raw token
HTH_AraC:490:0.00000442:527:38:42- Raw architecture: Response_reg:10:1.46e-32:121:112:111#HTH_AraC:490:0.00000442:527:38:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034124445::NZ_JAWYBC010000005.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span537904-539511Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000005.1::G00023Context members
U0C54_RS04290
Partner locus tags
U0C54_RS04290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025530900.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DL59Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DL59_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS04290Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000005.1Sequence record reported by the local genomic context database.
Genomic interval537 904-539 511 nt1 608 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span537 904-539 511 ntGCF_034124445::NZ_JAWYBC010000005.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000005.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000005.1All displayed genes belong to this local TCS context.
Neighborhood span537 904-539 511 nt1 608 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
537 904 nt539 511 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0C54_RS04290GCF_034124445#U0C54_RS04290
RRunclassifiedCurrent focus
537 904-539 511 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS14850Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0101042
Simplified PFAM architecture for RROC_0101042
PFAM domain coverage: 301 / 535 aa (56.3%)
1 aa535 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[10-121] | GGDEF_2[185-294] | HTH_18[450-528]
- Domain count: 3
- Matched identifier: RROC_0101042
- Positioned domains: Response_reg 10-121 ; Response_reg 10-121 ; GGDEF_2 185-294 ; GGDEF_2 185-294 ; HTH_18 450-528 ; HTH_18 450-528
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS14850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key