1 HAMP#1
178-241 aa · 64 aa · 13.9% of protein
Raw token
HAMP:178:0.00000000000624:241:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS03925
Histidine kinase, Classic
Hungatella effluvii · GCF_034124445
ClassHKTypeClassicLength462 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS03925Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length462 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage229 / 462 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa462 aa
Domain-by-domain annotation3 items
2 HisKA#2
252-312 aa · 61 aa · 13.2% of protein
Raw token
HisKA:252:0.00000000000825:312:62:643 HATPase_c#3
357-460 aa · 104 aa · 22.5% of protein
Raw token
HATPase_c:357:0.00000000000000402:460:108:109- Raw architecture: HAMP:178:0.00000000000624:241:64:69#HisKA:252:0.00000000000825:312:62:64#HATPase_c:357:0.00000000000000402:460:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000005.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span459627-461658Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000005.1::G00022Context members
U0C54_RS03925U0C54_RS03930
Partner locus tags
U0C54_RS03925U0C54_RS03930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002602747.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DKJ3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DKJ3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS03925Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000005.1Sequence record reported by the local genomic context database.
Genomic interval459 627-461 015 nt1 389 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span459 627-461 658 ntGCF_034124445::NZ_JAWYBC010000005.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000005.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000005.1All displayed genes belong to this local TCS context.
Neighborhood span459 627-461 658 nt2 032 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
459 627 nt461 658 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS03925GCF_034124445#U0C54_RS03925
HKClassicCurrent focus
459 627-461 015 nt · Reverse (-)
U0C54_RS03930GCF_034124445#U0C54_RS03930
RROmpR
461 008-461 658 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS14815Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1807873
Simplified PFAM architecture for HKOC_1807873
PFAM domain coverage: 213 / 462 aa (46.1%)
1 aa462 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[190-241] | HisKA[253-312] | HATPase_c[358-458]
- Domain count: 3
- Matched identifier: HKOC_1807873
- Positioned domains: HAMP 190-241 ; HisKA 253-312 ; HATPase_c 358-458
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS14815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key