1 HAMP#1
272-348 aa · 77 aa · 13.5% of protein
Raw token
HAMP:272:0.000000191:348:77:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS03375
Histidine kinase, Classic
Hungatella effluvii · GCF_034124445
ClassHKTypeClassicLength570 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS03375Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length570 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 570 aa (45.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa570 aa
Domain-by-domain annotation3 items
2 His_kinase#2
364-441 aa · 78 aa · 13.7% of protein
Raw token
His_kinase:364:1.69e-30:441:79:803 HATPase_c#3
458-561 aa · 104 aa · 18.2% of protein
Raw token
HATPase_c:458:0.000000000722:561:106:109- Raw architecture: HAMP:272:0.000000191:348:77:69#His_kinase:364:1.69e-30:441:79:80#HATPase_c:458:0.000000000722:561:106:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000005.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span309022-311498Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000005.1::G00021Context members
U0C54_RS03370U0C54_RS03375
Partner locus tags
U0C54_RS03370U0C54_RS03375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025529954.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DNI9Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DNI9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS03375Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000005.1Sequence record reported by the local genomic context database.
Genomic interval309 786-311 498 nt1 713 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span309 022-311 498 ntGCF_034124445::NZ_JAWYBC010000005.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000005.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000005.1All displayed genes belong to this local TCS context.
Neighborhood span309 022-311 498 nt2 477 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
309 022 nt311 498 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS03370GCF_034124445#U0C54_RS03370
RRunclassified
309 022-309 798 nt · Reverse (-)
U0C54_RS03375GCF_034124445#U0C54_RS03375
HKClassicCurrent focus
309 786-311 498 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS12590Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1212904
Simplified PFAM architecture for HKOC_1212904
PFAM domain coverage: 226 / 570 aa (39.6%)
1 aa570 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[303-347] | His_kinase[364-441] | HATPase_c[459-561]
- Domain count: 3
- Matched identifier: HKOC_1212904
- Positioned domains: HAMP 303-347 ; His_kinase 364-441 ; HATPase_c 459-561
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS12590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key