1 Response_reg#1
4-117 aa · 114 aa · 21.6% of protein
Raw token
Response_reg:4:1.2e-27:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS02840
Response regulator, unclassified
Hungatella effluvii · GCF_034124445
ClassRRTypeunclassifiedLength527 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS02840Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length527 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 527 aa (28.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa527 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
480-517 aa · 38 aa · 7.2% of protein
Raw token
HTH_AraC:480:0.0000871:517:38:42- Raw architecture: Response_reg:4:1.2e-27:117:114:111#HTH_AraC:480:0.0000871:517:38:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000005.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span186080-189461Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000005.1::G00018Context members
U0C54_RS02835U0C54_RS02840
Partner locus tags
U0C54_RS02835U0C54_RS02840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025531515.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DN50Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DN50_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS02840Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000005.1Sequence record reported by the local genomic context database.
Genomic interval187 878-189 461 nt1 584 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span186 080-189 461 ntGCF_034124445::NZ_JAWYBC010000005.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000005.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000005.1All displayed genes belong to this local TCS context.
Neighborhood span186 080-189 461 nt3 382 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
186 080 nt189 461 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS02835GCF_034124445#U0C54_RS02835
HKClassic
186 080-187 885 nt · Forward (+)
U0C54_RS02840GCF_034124445#U0C54_RS02840
RRunclassifiedCurrent focus
187 878-189 461 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS12085Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0116248
Simplified PFAM architecture for RROC_0116248
PFAM domain coverage: 191 / 527 aa (36.2%)
1 aa527 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[441-518]
- Domain count: 2
- Matched identifier: RROC_0116248
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 441-518 ; HTH_18 441-518
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS12085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key