1 HAMP#1
276-341 aa · 66 aa · 11.6% of protein
Raw token
HAMP:276:0.00000386:341:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS02765
Histidine kinase, Classic
Hungatella effluvii · GCF_034124445
ClassHKTypeClassicLength567 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034124445#U0C54_RS02765Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length567 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 567 aa (43.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa567 aa
Domain-by-domain annotation3 items
2 His_kinase#2
359-437 aa · 79 aa · 13.9% of protein
Raw token
His_kinase:359:4.37e-26:437:81:803 HATPase_c#3
460-561 aa · 102 aa · 18.0% of protein
Raw token
HATPase_c:460:0.00000000000000508:561:102:109- Raw architecture: HAMP:276:0.00000386:341:67:69#His_kinase:359:4.37e-26:437:81:80#HATPase_c:460:0.00000000000000508:561:102:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034124445::NZ_JAWYBC010000005.1::G00016
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span170265-171968Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000005.1::G00016Context members
U0C54_RS02765
Partner locus tags
U0C54_RS02765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029466862.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DM80Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DM80_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS02765Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000005.1Sequence record reported by the local genomic context database.
Genomic interval170 265-171 968 nt1 704 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span170 265-171 968 ntGCF_034124445::NZ_JAWYBC010000005.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000005.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000005.1All displayed genes belong to this local TCS context.
Neighborhood span170 265-171 968 nt1 704 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
170 265 nt171 968 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0C54_RS02765GCF_034124445#U0C54_RS02765
HKClassicCurrent focus
170 265-171 968 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS12010Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1226048
Simplified PFAM architecture for HKOC_1226048
PFAM domain coverage: 186 / 567 aa (32.8%)
1 aa567 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[359-437] | HATPase_c[456-562]
- Domain count: 2
- Matched identifier: HKOC_1226048
- Positioned domains: His_kinase 359-437 ; HATPase_c 456-562
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS12010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key