1 HAMP#1
186-250 aa · 65 aa · 13.5% of protein
Raw token
HAMP:186:0.0000631:250:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS02430
Histidine kinase, Classic
Hungatella effluvii · GCF_034124445
ClassHKTypeClassicLength481 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034124445#U0C54_RS02430Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length481 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 481 aa (50.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa481 aa
Domain-by-domain annotation3 items
2 HisKA#2
254-319 aa · 66 aa · 13.7% of protein
Raw token
HisKA:254:0.000000000000502:319:66:643 HATPase_c#3
368-478 aa · 111 aa · 23.1% of protein
Raw token
HATPase_c:368:3.78e-32:478:111:109- Raw architecture: HAMP:186:0.0000631:250:65:69#HisKA:254:0.000000000000502:319:66:64#HATPase_c:368:3.78e-32:478:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034124445::NZ_JAWYBC010000005.1::G00012
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span88286-89731Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000005.1::G00012Context members
U0C54_RS02430
Partner locus tags
U0C54_RS02430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025530557.1Primary protein accession used for annex mappings.
UniProt accessionA0A174BFT6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174BFT6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS02430Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000005.1Sequence record reported by the local genomic context database.
Genomic interval88 286-89 731 nt1 446 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span88 286-89 731 ntGCF_034124445::NZ_JAWYBC010000005.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000005.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000005.1All displayed genes belong to this local TCS context.
Neighborhood span88 286-89 731 nt1 446 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 286 nt89 731 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0C54_RS02430GCF_034124445#U0C54_RS02430
HKClassicCurrent focus
88 286-89 731 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405675#ARA98_RS07750Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1612202
Simplified PFAM architecture for HKOC_1612202
PFAM domain coverage: 176 / 481 aa (36.6%)
1 aa481 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[255-319] | HATPase_c[368-478]
- Domain count: 2
- Matched identifier: HKOC_1612202
- Positioned domains: HisKA 255-319 ; HATPase_c 368-478
Cluster members and taxonomy
Representative gene: GCF_001405675#ARA98_RS07750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key