1 HAMP#1
290-360 aa · 71 aa · 11.9% of protein
Raw token
HAMP:290:0.00000155:360:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS01895
Histidine kinase, Classic
Hungatella effluvii · GCF_034124445
ClassHKTypeClassicLength596 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS01895Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length596 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage209 / 596 aa (35.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa596 aa
Domain-by-domain annotation3 items
2 His_kinase#2
377-456 aa · 80 aa · 13.4% of protein
Raw token
His_kinase:377:7.48e-26:456:80:803 HATPase_c#3
468-525 aa · 58 aa · 9.7% of protein
Raw token
HATPase_c:468:0.00000195:525:58:109- Raw architecture: HAMP:290:0.00000155:360:71:69#His_kinase:377:7.48e-26:456:80:80#HATPase_c:468:0.00000195:525:58:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000004.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span112911-116232Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000004.1::G00009Context members
U0C54_RS01895U0C54_RS01900
Partner locus tags
U0C54_RS01895U0C54_RS01900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025529863.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DQA7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DQA7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS01895Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000004.1Sequence record reported by the local genomic context database.
Genomic interval112 911-114 701 nt1 791 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span112 911-116 232 ntGCF_034124445::NZ_JAWYBC010000004.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000004.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000004.1All displayed genes belong to this local TCS context.
Neighborhood span112 911-116 232 nt3 322 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
112 911 nt116 232 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS01895GCF_034124445#U0C54_RS01895
HKClassicCurrent focus
112 911-114 701 nt · Forward (+)
U0C54_RS01900GCF_034124445#U0C54_RS01900
RRunclassified
114 703-116 232 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS07765Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1075184
Simplified PFAM architecture for HKOC_1075184
PFAM domain coverage: 80 / 596 aa (13.4%)
1 aa596 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[377-456]
- Domain count: 1
- Matched identifier: HKOC_1075184
- Positioned domains: His_kinase 377-456
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS07765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key