1 Response_reg#1
3-105 aa · 103 aa · 20.7% of protein
Raw token
Response_reg:3:8.41e-22:105:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS00530
Response regulator, unclassified
Hungatella effluvii · GCF_034124445
ClassRRTypeunclassifiedLength498 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS00530Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage177 / 498 aa (35.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
398-439 aa · 42 aa · 8.4% of protein
Raw token
HTH_AraC:398:0.000000737:439:42:423 HTH_AraC#3
454-485 aa · 32 aa · 6.4% of protein
Raw token
HTH_AraC:454:0.0000627:485:32:42- Raw architecture: Response_reg:3:8.41e-22:105:103:111#HTH_AraC:398:0.000000737:439:42:42#HTH_AraC:454:0.0000627:485:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000003.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span102436-105796Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000003.1::G00003Context members
U0C54_RS00530U0C54_RS00535
Partner locus tags
U0C54_RS00530U0C54_RS00535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002603583.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DNP1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DNP1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS00530Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000003.1Sequence record reported by the local genomic context database.
Genomic interval102 436-103 932 nt1 497 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span102 436-105 796 ntGCF_034124445::NZ_JAWYBC010000003.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000003.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000003.1All displayed genes belong to this local TCS context.
Neighborhood span102 436-105 796 nt3 361 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 436 nt105 796 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS00530GCF_034124445#U0C54_RS00530
RRunclassifiedCurrent focus
102 436-103 932 nt · Reverse (-)
U0C54_RS00535GCF_034124445#U0C54_RS00535
HKClassic
103 907-105 796 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS18970Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0160016
Simplified PFAM architecture for RROC_0160016
PFAM domain coverage: 182 / 498 aa (36.5%)
1 aa498 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-107] | HTH_18[413-489]
- Domain count: 2
- Matched identifier: RROC_0160016
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107 ; HTH_18 413-489 ; HTH_18 413-489
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS18970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key