1 HAMP#1
223-286 aa · 64 aa · 12.5% of protein
Raw token
HAMP:223:0.00000000262:286:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F56_RS22800
Histidine kinase, Classic
Hungatella effluvii · GCF_034121375
ClassHKTypeClassicLength513 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_034121375#U0F56_RS22800Stable P2CS identifier used across views.
GenomeGCF_034121375Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length513 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 513 aa (47.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa513 aa
Domain-by-domain annotation3 items
2 His_kinase#2
311-389 aa · 79 aa · 15.4% of protein
Raw token
His_kinase:311:1.07e-33:389:79:803 HATPase_c#3
408-506 aa · 99 aa · 19.3% of protein
Raw token
HATPase_c:408:0.0000000000000158:506:102:109- Raw architecture: HAMP:223:0.00000000262:286:64:69#His_kinase:311:1.07e-33:389:79:80#HATPase_c:408:0.0000000000000158:506:102:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_034121375::NZ_JAWYGL010000103.1::G00031
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span78102-84176Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034121375::NZ_JAWYGL010000103.1::G00031Context members
U0F56_RS22785U0F56_RS22790U0F56_RS22800U0F56_RS22805
Partner locus tags
U0F56_RS22785U0F56_RS22790U0F56_RS22800U0F56_RS22805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_336624537.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F56_RS22800Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYGL010000103.1Sequence record reported by the local genomic context database.
Genomic interval81 681-83 174 nt1 494 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span78 102-84 176 ntGCF_034121375::NZ_JAWYGL010000103.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034121375::NZ_JAWYGL010000103.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYGL010000103.1All displayed genes belong to this local TCS context.
Neighborhood span78 102-84 176 nt6 075 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 102 nt84 176 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
U0F56_RS22785GCF_034121375#U0F56_RS22785
HKClassic
78 102-79 943 nt · Forward (+)
U0F56_RS22790GCF_034121375#U0F56_RS22790
RRunclassified
79 958-81 412 nt · Forward (+)
U0F56_RS22800GCF_034121375#U0F56_RS22800
HKClassicCurrent focus
81 681-83 174 nt · Forward (+)
U0F56_RS22805GCF_034121375#U0F56_RS22805
RRunclassified
83 298-84 176 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034121375#U0F56_RS22800The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1418170
Simplified PFAM architecture for HKOC_1418170
PFAM domain coverage: 180 / 513 aa (35.1%)
1 aa513 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[311-389] | HATPase_c[408-508]
- Domain count: 2
- Matched identifier: HKOC_1418170
- Positioned domains: His_kinase 311-389 ; HATPase_c 408-508
Cluster members and taxonomy
Representative gene: GCF_034121375#U0F56_RS22800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034121375
AssemblyASM3412137v1 · Scaffoldhaploid
Genome composition7 108 992 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 278 · HK 134 · RR 140CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key