1 Response_reg#1
4-113 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:4:2.97e-39:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J5I77_RS17590
Response regulator OmpR family
Escherichia coli · GCF_033843485
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033843485#J5I77_RS17590Stable P2CS identifier used across views.
GenomeGCF_033843485Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 232 aa (80.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 32.8% of protein
Raw token
Trans_reg_C:148:1.09e-26:223:76:77- Raw architecture: Response_reg:4:2.97e-39:113:111:111#Trans_reg_C:148:1.09e-26:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033843485::NZ_JAWXVR010000003.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3423913-3427292Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ5I77_17590RefSeq proteinWP_319789347.1
Context group ID
GCF_033843485::NZ_JAWXVR010000003.1::G00026Context members
J5I77_RS17585J5I77_RS17590
Partner locus tags
J5I77_RS17585J5I77_RS17590
Partner old locus tags
J5I77_17585J5I77_17590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_319789347.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ5I77_RS17590Primary locus identifier stored in the genes table.
Old locus tagJ5I77_17590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWXVR010000003.1Sequence record reported by the local genomic context database.
Genomic interval3 426 594-3 427 292 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 423 913-3 427 292 ntGCF_033843485::NZ_JAWXVR010000003.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033843485::NZ_JAWXVR010000003.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWXVR010000003.1All displayed genes belong to this local TCS context.
Neighborhood span3 423 913-3 427 292 nt3 380 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 423 913 nt3 427 292 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J5I77_RS17585GCF_033843485#J5I77_RS17585
HKClassic
3 423 913-3 426 597 nt · Forward (+)
J5I77_RS17590GCF_033843485#J5I77_RS17590
RROmpRCurrent focus
3 426 594-3 427 292 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033843485#J5I77_RS17590The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1144905
Simplified PFAM architecture for RROC_1144905
PFAM domain coverage: 185 / 232 aa (79.7%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1144905
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_033843485#J5I77_RS17590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_033843485
AssemblyASM3384348v1 · Scaffoldhaploid
Genome composition5 272 433 bp · 50,5% GCEscherichia coli
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key