1 Response_reg#1
9-117 aa · 109 aa · 46.8% of protein
Raw token
Response_reg:9:4.24e-32:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SIK61_RS12900
Response regulator OmpR family
Clostridioides difficile · GCF_033840955
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033840955#SIK61_RS12900Stable P2CS identifier used across views.
GenomeGCF_033840955Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 233 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-231 aa · 76 aa · 32.6% of protein
Raw token
Trans_reg_C:156:6.06e-29:231:76:77- Raw architecture: Response_reg:9:4.24e-32:117:111:111#Trans_reg_C:156:6.06e-29:231:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033840955::NZ_JAWXRW010000342.1::G00017
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-701Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSIK61_12885RefSeq proteinWP_320062532.1
Context group ID
GCF_033840955::NZ_JAWXRW010000342.1::G00017Context members
SIK61_RS12900
Partner locus tags
SIK61_RS12900
Partner old locus tags
SIK61_12885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320062532.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSIK61_RS12900Primary locus identifier stored in the genes table.
Old locus tagSIK61_12885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWXRW010000342.1Sequence record reported by the local genomic context database.
Genomic interval1-701 nt701 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-701 ntGCF_033840955::NZ_JAWXRW010000342.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033840955::NZ_JAWXRW010000342.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWXRW010000342.1All displayed genes belong to this local TCS context.
Neighborhood span1-701 nt701 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt701 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SIK61_RS12900GCF_033840955#SIK61_RS12900
RROmpRCurrent focus
1-701 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0213760Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047053
Simplified PFAM architecture for RROC_1047053
PFAM domain coverage: 186 / 234 aa (79.5%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-117] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_1047053
- Positioned domains: Response_reg 9-117 ; Response_reg 9-117 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0213760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033840955
AssemblyASM3384095v1 · Contighaploid
Genome composition3 759 897 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 86 · HK 36 · RR 47CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key