1 HisKA#1
199-258 aa · 60 aa · 13.8% of protein
Raw token
HisKA:199:0.00000000136:258:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SIK40_RS09890
Histidine kinase, Classic
Clostridioides difficile · GCF_033840485
ClassHKTypeClassicLength436 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033840485#SIK40_RS09890Stable P2CS identifier used across views.
GenomeGCF_033840485Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length436 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 436 aa (38.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa436 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
304-410 aa · 107 aa · 24.5% of protein
Raw token
HATPase_c:304:1.81e-21:410:107:109- Raw architecture: HisKA:199:0.00000000136:258:60:64#HATPase_c:304:1.81e-21:410:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033840485::NZ_JAWXRN010000172.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96-2088Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSIK40_09905RefSeq proteinWP_320070416.1
Context group ID
GCF_033840485::NZ_JAWXRN010000172.1::G00007Context members
SIK40_RS09885SIK40_RS09890
Partner locus tags
SIK40_RS09885SIK40_RS09890
Partner old locus tags
SIK40_09900SIK40_09905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320070416.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSIK40_RS09890Primary locus identifier stored in the genes table.
Old locus tagSIK40_09905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWXRN010000172.1Sequence record reported by the local genomic context database.
Genomic interval778-2 088 nt1 311 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96-2 088 ntGCF_033840485::NZ_JAWXRN010000172.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033840485::NZ_JAWXRN010000172.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWXRN010000172.1All displayed genes belong to this local TCS context.
Neighborhood span96-2 088 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 nt2 088 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SIK40_RS09885GCF_033840485#SIK40_RS09885
RROmpR
96-800 nt · Forward (+)
SIK40_RS09890GCF_033840485#SIK40_RS09890
HKClassicCurrent focus
778-2 088 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033840485#SIK40_RS09890The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2118634
Simplified PFAM architecture for HKOC_2118634
PFAM domain coverage: 169 / 436 aa (38.8%)
1 aa436 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[196-258] | HATPase_c[305-410]
- Domain count: 2
- Matched identifier: HKOC_2118634
- Positioned domains: HisKA 196-258 ; HATPase_c 305-410
Cluster members and taxonomy
Representative gene: GCF_033840485#SIK40_RS09890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033840485
AssemblyASM3384048v1 · Contighaploid
Genome composition3 931 618 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 91 · HK 39 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key