1 HisKA_3#1
211-274 aa · 64 aa · 14.3% of protein
Raw token
HisKA_3:211:0.00000000000000472:274:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS932_RS01560
Histidine kinase, Classic
Bifidobacterium longum · GCF_033658925
ClassHKTypeClassicLength446 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033658925#RS932_RS01560Stable P2CS identifier used across views.
GenomeGCF_033658925Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length446 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 446 aa (41.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
318-439 aa · 122 aa · 27.4% of protein
Raw token
HATPase_c:318:0.0000000165:439:123:109- Raw architecture: HisKA_3:211:0.00000000000000472:274:64:68#HATPase_c:318:0.0000000165:439:123:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033658925::NZ_JAWWSF010000002.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span88782-90775Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033658925::NZ_JAWWSF010000002.1::G00001Context members
RS932_RS01560RS932_RS01565
Partner locus tags
RS932_RS01560RS932_RS01565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_251882562.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS932_RS01560Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWSF010000002.1Sequence record reported by the local genomic context database.
Genomic interval88 782-90 122 nt1 341 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span88 782-90 775 ntGCF_033658925::NZ_JAWWSF010000002.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033658925::NZ_JAWWSF010000002.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWSF010000002.1All displayed genes belong to this local TCS context.
Neighborhood span88 782-90 775 nt1 994 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 782 nt90 775 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS932_RS01560GCF_033658925#RS932_RS01560
HKClassicCurrent focus
88 782-90 122 nt · Forward (+)
RS932_RS01565GCF_033658925#RS932_RS01565
RRNarL
90 122-90 775 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033658925#RS932_RS01560The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2018134
Simplified PFAM architecture for HKOC_2018134
PFAM domain coverage: 66 / 446 aa (14.8%)
1 aa446 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[211-276]
- Domain count: 1
- Matched identifier: HKOC_2018134
- Positioned domains: HisKA_3 211-276
Cluster members and taxonomy
Representative gene: GCF_033658925#RS932_RS01560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033658925
AssemblyASM3365892v1 · Contighaploid
Genome composition2 460 906 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 37 · HK 10 · RR 23CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key