1 HisKA_3#1
265-329 aa · 65 aa · 13.4% of protein
Raw token
HisKA_3:265:0.00000000000891:329:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS890_RS10440
Histidine kinase, Classic
Bifidobacterium longum · GCF_033344545
ClassHKTypeClassicLength485 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033344545#RS890_RS10440Stable P2CS identifier used across views.
GenomeGCF_033344545Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length485 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 485 aa (31.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa485 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
395-480 aa · 86 aa · 17.7% of protein
Raw token
HATPase_c:395:0.0000281:480:96:109- Raw architecture: HisKA_3:265:0.00000000000891:329:65:68#HATPase_c:395:0.0000281:480:96:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033344545::NZ_JAWLRA010000037.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span79953-82152Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRS890_10460RefSeq proteinWP_260847633.1
Context group ID
GCF_033344545::NZ_JAWLRA010000037.1::G00015Context members
RS890_RS10440RS890_RS10445
Partner locus tags
RS890_RS10440RS890_RS10445
Partner old locus tags
RS890_10460RS890_10465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_260847633.1Primary protein accession used for annex mappings.
UniProt accessionA0AB35SCJ3Primary UniProt accession resolved in the annex database.
UniProt IDA0AB35SCJ3_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS890_RS10440Primary locus identifier stored in the genes table.
Old locus tagRS890_10460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWLRA010000037.1Sequence record reported by the local genomic context database.
Genomic interval79 953-81 410 nt1 458 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span79 953-82 152 ntGCF_033344545::NZ_JAWLRA010000037.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033344545::NZ_JAWLRA010000037.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWLRA010000037.1All displayed genes belong to this local TCS context.
Neighborhood span79 953-82 152 nt2 200 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 953 nt82 152 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS890_RS10440GCF_033344545#RS890_RS10440
HKClassicCurrent focus
79 953-81 410 nt · Forward (+)
RS890_RS10445GCF_033344545#RS890_RS10445
RRNarL
81 424-82 152 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344545#RS890_RS10440The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1581184
Simplified PFAM architecture for HKOC_1581184
PFAM domain coverage: 68 / 485 aa (14.0%)
1 aa485 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[265-332]
- Domain count: 1
- Matched identifier: HKOC_1581184
- Positioned domains: HisKA_3 265-332
Cluster members and taxonomy
Representative gene: GCF_033344545#RS890_RS10440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033344545
AssemblyASM3334454v1 · Contighaploid
Genome composition2 394 640 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 28 · HK 12 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key