1 HisKA#1
371-443 aa · 73 aa · 11.6% of protein
Raw token
HisKA:371:0.0000000000000161:443:75:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6096_RS12835
Histidine kinase, Classic
Clostridium sp. · GCF_032556535
ClassHKTypeClassicLength627 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032556535#E6096_RS12835Stable P2CS identifier used across views.
GenomeGCF_032556535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length627 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 627 aa (29.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa627 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
490-598 aa · 109 aa · 17.4% of protein
Raw token
HATPase_c:490:4.81e-32:598:109:109- Raw architecture: HisKA:371:0.0000000000000161:443:75:64#HATPase_c:490:4.81e-32:598:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032556535::NZ_JAWGMZ010000014.1::G00024
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span9581-11464Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6096_12835RefSeq proteinWP_099328263.1
Context group ID
GCF_032556535::NZ_JAWGMZ010000014.1::G00024Context members
E6096_RS12835
Partner locus tags
E6096_RS12835
Partner old locus tags
E6096_12835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_099328263.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6096_RS12835Primary locus identifier stored in the genes table.
Old locus tagE6096_12835Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWGMZ010000014.1Sequence record reported by the local genomic context database.
Genomic interval9 581-11 464 nt1 884 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 581-11 464 ntGCF_032556535::NZ_JAWGMZ010000014.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032556535::NZ_JAWGMZ010000014.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWGMZ010000014.1All displayed genes belong to this local TCS context.
Neighborhood span9 581-11 464 nt1 884 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 581 nt11 464 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E6096_RS12835GCF_032556535#E6096_RS12835
HKClassicCurrent focus
9 581-11 464 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003611795#D7V67_RS06755Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0955832
Simplified PFAM architecture for HKOC_0955832
PFAM domain coverage: 183 / 627 aa (29.2%)
1 aa627 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[371-443] | HATPase_c[490-599]
- Domain count: 2
- Matched identifier: HKOC_0955832
- Positioned domains: HisKA 371-443 ; HATPase_c 490-599
Cluster members and taxonomy
Representative gene: GCF_003611795#D7V67_RS06755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032556535
AssemblyASM3255653v1 · Scaffoldhaploid
Genome composition3 345 692 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 70 · HK 37 · RR 31CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key