1 HisKA_3#1
177-244 aa · 68 aa · 17.4% of protein
Raw token
HisKA_3:177:8.79e-19:244:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6096_RS02620
Histidine kinase, Classic
Clostridium sp. · GCF_032556535
ClassHKTypeClassicLength391 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032556535#E6096_RS02620Stable P2CS identifier used across views.
GenomeGCF_032556535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length391 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 391 aa (42.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa391 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
281-377 aa · 97 aa · 24.8% of protein
Raw token
HATPase_c:281:0.000000000000719:377:106:109- Raw architecture: HisKA_3:177:8.79e-19:244:68:68#HATPase_c:281:0.000000000000719:377:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032556535::NZ_JAWGMZ010000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span168518-170339Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6096_02620RefSeq proteinWP_034865878.1
Context group ID
GCF_032556535::NZ_JAWGMZ010000002.1::G00004Context members
E6096_RS02615E6096_RS02620
Partner locus tags
E6096_RS02615E6096_RS02620
Partner old locus tags
E6096_02615E6096_02620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_034865878.1Primary protein accession used for annex mappings.
UniProt accessionA0A174BWH3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174BWH3_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6096_RS02620Primary locus identifier stored in the genes table.
Old locus tagE6096_02620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWGMZ010000002.1Sequence record reported by the local genomic context database.
Genomic interval169 164-170 339 nt1 176 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span168 518-170 339 ntGCF_032556535::NZ_JAWGMZ010000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032556535::NZ_JAWGMZ010000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWGMZ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span168 518-170 339 nt1 822 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
168 518 nt170 339 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6096_RS02615GCF_032556535#E6096_RS02615
RRNarL
168 518-169 186 nt · Reverse (-)
E6096_RS02620GCF_032556535#E6096_RS02620
HKClassicCurrent focus
169 164-170 339 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0104210Use this link to inspect the representative gene detail.
PFAM architectureDegS + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2519578
Simplified PFAM architecture for HKOC_2519578
PFAM domain coverage: 317 / 391 aa (81.1%)
1 aa391 aa
DegSHisKA_3HATPase_c
- Simplified architecture: DegS + HisKA_3 + HATPase_c
- Raw architecture: DegS[13-165] | HisKA_3[177-243] | HATPase_c[282-378]
- Domain count: 3
- Matched identifier: HKOC_2519578
- Positioned domains: DegS 13-165 ; HisKA_3 177-243 ; HATPase_c 282-378
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0104210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032556535
AssemblyASM3255653v1 · Scaffoldhaploid
Genome composition3 345 692 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 70 · HK 37 · RR 31CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key