1 Response_reg#1
5-114 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:5:1.26e-40:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6096_RS07835
Response regulator OmpR family
Clostridium sp. · GCF_032556535
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032556535#E6096_RS07835Stable P2CS identifier used across views.
GenomeGCF_032556535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 223 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-220 aa · 71 aa · 31.8% of protein
Raw token
Trans_reg_C:150:2.68e-29:220:74:77- Raw architecture: Response_reg:5:1.26e-40:114:111:111#Trans_reg_C:150:2.68e-29:220:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032556535::NZ_JAWGMZ010000005.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span154021-156188Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6096_07835RefSeq proteinWP_027097934.1
Context group ID
GCF_032556535::NZ_JAWGMZ010000005.1::G00017Context members
E6096_RS07835E6096_RS07840
Partner locus tags
E6096_RS07835E6096_RS07840
Partner old locus tags
E6096_07835E6096_07840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027097934.1Primary protein accession used for annex mappings.
UniProt accessionA0A174EKL0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174EKL0_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6096_RS07835Primary locus identifier stored in the genes table.
Old locus tagE6096_07835Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWGMZ010000005.1Sequence record reported by the local genomic context database.
Genomic interval154 021-154 692 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span154 021-156 188 ntGCF_032556535::NZ_JAWGMZ010000005.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032556535::NZ_JAWGMZ010000005.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWGMZ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span154 021-156 188 nt2 168 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 021 nt156 188 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6096_RS07835GCF_032556535#E6096_RS07835
RROmpRCurrent focus
154 021-154 692 nt · Forward (+)
E6096_RS07840GCF_032556535#E6096_RS07840
HKClassic
154 692-156 188 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0107020Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1589652
Simplified PFAM architecture for RROC_1589652
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[150-220]
- Domain count: 2
- Matched identifier: RROC_1589652
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 150-220 ; Trans_reg_C 150-220
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0107020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032556535
AssemblyASM3255653v1 · Scaffoldhaploid
Genome composition3 345 692 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 70 · HK 37 · RR 31CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key