1 PAS#1
180-287 aa · 108 aa · 19.0% of protein
Raw token
PAS:180:0.000000292:287:113:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6096_RS06140
Histidine kinase, Classic
Clostridium sp. · GCF_032556535
ClassHKTypeClassicLength569 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032556535#E6096_RS06140Stable P2CS identifier used across views.
GenomeGCF_032556535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_c
Protein length569 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 569 aa (50.6%)Merged over positioned domains only.
Domain description1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa569 aa
Domain-by-domain annotation3 items
2 HisKA#2
309-379 aa · 71 aa · 12.5% of protein
Raw token
HisKA:309:0.000000000000853:379:71:643 HATPase_c#3
426-534 aa · 109 aa · 19.2% of protein
Raw token
HATPase_c:426:4.37e-32:534:109:109- Raw architecture: PAS:180:0.000000292:287:113:113#HisKA:309:0.000000000000853:379:71:64#HATPase_c:426:4.37e-32:534:109:109
- Domain description: 1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032556535::NZ_JAWGMZ010000004.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span150762-152471Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6096_06140RefSeq proteinWP_316088691.1
Context group ID
GCF_032556535::NZ_JAWGMZ010000004.1::G00014Context members
E6096_RS06140
Partner locus tags
E6096_RS06140
Partner old locus tags
E6096_06140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_316088691.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6096_RS06140Primary locus identifier stored in the genes table.
Old locus tagE6096_06140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWGMZ010000004.1Sequence record reported by the local genomic context database.
Genomic interval150 762-152 471 nt1 710 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span150 762-152 471 ntGCF_032556535::NZ_JAWGMZ010000004.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032556535::NZ_JAWGMZ010000004.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWGMZ010000004.1All displayed genes belong to this local TCS context.
Neighborhood span150 762-152 471 nt1 710 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
150 762 nt152 471 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E6096_RS06140GCF_032556535#E6096_RS06140
HKClassicCurrent focus
150 762-152 471 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032476635#E6794_RS01750Use this link to inspect the representative gene detail.
PFAM architecturePAS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1219072
Simplified PFAM architecture for HKOC_1219072
PFAM domain coverage: 283 / 569 aa (49.7%)
1 aa569 aa
PASHisKAHATPase_c
- Simplified architecture: PAS + HisKA + HATPase_c
- Raw architecture: PAS[181-282] | HisKA[309-379] | HATPase_c[426-535]
- Domain count: 3
- Matched identifier: HKOC_1219072
- Positioned domains: PAS 181-282 ; HisKA 309-379 ; HATPase_c 426-535
Cluster members and taxonomy
Representative gene: GCF_032476635#E6794_RS01750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032556535
AssemblyASM3255653v1 · Scaffoldhaploid
Genome composition3 345 692 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 70 · HK 37 · RR 31CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key