1 HisKA#1
235-301 aa · 67 aa · 14.7% of protein
Raw token
HisKA:235:0.000000000491:301:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6X21_RS00845
Histidine kinase, Classic
Clostridium sp. · GCF_032550875
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032550875#E6X21_RS00845Stable P2CS identifier used across views.
GenomeGCF_032550875Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 455 aa (38.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa455 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
348-454 aa · 107 aa · 23.5% of protein
Raw token
HATPase_c:348:1.5e-21:454:107:109- Raw architecture: HisKA:235:0.000000000491:301:67:64#HATPase_c:348:1.5e-21:454:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032550875::NZ_JAWFYT010000002.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24377-26414Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6X21_00845RefSeq proteinWP_346940838.1
Context group ID
GCF_032550875::NZ_JAWFYT010000002.1::G00001Context members
E6X21_RS00840E6X21_RS00845
Partner locus tags
E6X21_RS00840E6X21_RS00845
Partner old locus tags
E6X21_00840E6X21_00845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_346940838.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6X21_RS00845Primary locus identifier stored in the genes table.
Old locus tagE6X21_00845Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWFYT010000002.1Sequence record reported by the local genomic context database.
Genomic interval25 047-26 414 nt1 368 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 377-26 414 ntGCF_032550875::NZ_JAWFYT010000002.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032550875::NZ_JAWFYT010000002.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWFYT010000002.1All displayed genes belong to this local TCS context.
Neighborhood span24 377-26 414 nt2 038 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 377 nt26 414 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6X21_RS00840GCF_032550875#E6X21_RS00840
RROmpR
24 377-25 060 nt · Forward (+)
E6X21_RS00845GCF_032550875#E6X21_RS00845
HKClassicCurrent focus
25 047-26 414 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032550875#E6X21_RS00845The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1907704
Simplified PFAM architecture for HKOC_1907704
PFAM domain coverage: 166 / 455 aa (36.5%)
1 aa455 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[237-295] | HATPase_c[348-454]
- Domain count: 2
- Matched identifier: HKOC_1907704
- Positioned domains: HisKA 237-295 ; HATPase_c 348-454
Cluster members and taxonomy
Representative gene: GCF_032550875#E6X21_RS00845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032550875
AssemblyASM3255087v1 · Contighaploid
Genome composition3 484 804 bp · 31,0% GCClostridium sp.
Signal transduction countsGenes 78 · HK 38 · RR 39CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key