1 PAS#1
180-287 aa · 108 aa · 19.0% of protein
Raw token
PAS:180:0.000000302:287:113:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7I47_RS10440
Histidine kinase, Classic
Clostridium sp. · GCF_032513585
ClassHKTypeClassicLength569 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032513585#E7I47_RS10440Stable P2CS identifier used across views.
GenomeGCF_032513585Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_c
Protein length569 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 569 aa (50.6%)Merged over positioned domains only.
Domain description1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa569 aa
Domain-by-domain annotation3 items
2 HisKA#2
309-379 aa · 71 aa · 12.5% of protein
Raw token
HisKA:309:0.000000000000976:379:71:643 HATPase_c#3
426-534 aa · 109 aa · 19.2% of protein
Raw token
HATPase_c:426:6.69e-33:534:109:109- Raw architecture: PAS:180:0.000000302:287:113:113#HisKA:309:0.000000000000976:379:71:64#HATPase_c:426:6.69e-33:534:109:109
- Domain description: 1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032513585::NZ_JAWFMY010000011.1::G00026
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span62961-64670Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7I47_10435RefSeq proteinWP_281203499.1
Context group ID
GCF_032513585::NZ_JAWFMY010000011.1::G00026Context members
E7I47_RS10440
Partner locus tags
E7I47_RS10440
Partner old locus tags
E7I47_10435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_281203499.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7I47_RS10440Primary locus identifier stored in the genes table.
Old locus tagE7I47_10435Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWFMY010000011.1Sequence record reported by the local genomic context database.
Genomic interval62 961-64 670 nt1 710 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span62 961-64 670 ntGCF_032513585::NZ_JAWFMY010000011.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032513585::NZ_JAWFMY010000011.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWFMY010000011.1All displayed genes belong to this local TCS context.
Neighborhood span62 961-64 670 nt1 710 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 961 nt64 670 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E7I47_RS10440GCF_032513585#E7I47_RS10440
HKClassicCurrent focus
62 961-64 670 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028210535#PM009_RS09890Use this link to inspect the representative gene detail.
PFAM architecturePAS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1218826
Simplified PFAM architecture for HKOC_1218826
PFAM domain coverage: 283 / 569 aa (49.7%)
1 aa569 aa
PASHisKAHATPase_c
- Simplified architecture: PAS + HisKA + HATPase_c
- Raw architecture: PAS[181-282] | HisKA[309-379] | HATPase_c[426-535]
- Domain count: 3
- Matched identifier: HKOC_1218826
- Positioned domains: PAS 181-282 ; HisKA 309-379 ; HATPase_c 426-535
Cluster members and taxonomy
Representative gene: GCF_028210535#PM009_RS09890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032513585
AssemblyASM3251358v1 · Contighaploid
Genome composition3 567 097 bp · 29,5% GCClostridium sp.
Signal transduction countsGenes 76 · HK 40 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key