1 Response_reg#1
9-116 aa · 108 aa · 31.5% of protein
Raw token
Response_reg:9:6.29e-21:116:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7I47_RS00360
Response regulator RpfG family
Clostridium sp. · GCF_032513585
ClassRRTypeRpfGLength343 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_032513585#E7I47_RS00360Stable P2CS identifier used across views.
GenomeGCF_032513585Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage233 / 343 aa (67.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HD#2
168-292 aa · 125 aa · 36.4% of protein
Raw token
HD:168:2.93e-17:292:125:110- Raw architecture: Response_reg:9:6.29e-21:116:108:111#HD:168:2.93e-17:292:125:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_032513585::NZ_JAWFMY010000001.1::G00001
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span83676-87944Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7I47_00360RefSeq proteinWP_055183524.1
Context group ID
GCF_032513585::NZ_JAWFMY010000001.1::G00001Context members
E7I47_RS00360E7I47_RS00365E7I47_RS00375
Partner locus tags
E7I47_RS00360E7I47_RS00365E7I47_RS00375
Partner old locus tags
E7I47_00360E7I47_00365E7I47_00375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055183524.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7I47_RS00360Primary locus identifier stored in the genes table.
Old locus tagE7I47_00360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWFMY010000001.1Sequence record reported by the local genomic context database.
Genomic interval83 676-84 707 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 676-87 944 ntGCF_032513585::NZ_JAWFMY010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032513585::NZ_JAWFMY010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWFMY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span83 676-87 944 nt4 269 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 676 nt87 944 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
E7I47_RS00360GCF_032513585#E7I47_RS00360
RRRpfGCurrent focus
83 676-84 707 nt · Forward (+)
E7I47_RS00365GCF_032513585#E7I47_RS00365
HKHybrid
84 691-86 778 nt · Forward (+)
E7I47_RS00375GCF_032513585#E7I47_RS00375
RRunclassified
87 165-87 944 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406515#ARA43_RS01645Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0496020
Simplified PFAM architecture for RROC_0496020
PFAM domain coverage: 272 / 343 aa (79.3%)
1 aa343 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[8-115] | HD_5[159-322]
- Domain count: 2
- Matched identifier: RROC_0496020
- Positioned domains: Response_reg 8-115 ; Response_reg 8-115 ; HD_5 159-322 ; HD_5 159-322
Cluster members and taxonomy
Representative gene: GCF_001406515#ARA43_RS01645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032513585
AssemblyASM3251358v1 · Contighaploid
Genome composition3 567 097 bp · 29,5% GCClostridium sp.
Signal transduction countsGenes 76 · HK 40 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key