1 Response_reg#1
4-108 aa · 105 aa · 45.1% of protein
Raw token
Response_reg:4:3.33e-30:108:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7I47_RS10355
Response regulator OmpR family
Clostridium sp. · GCF_032513585
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032513585#E7I47_RS10355Stable P2CS identifier used across views.
GenomeGCF_032513585Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 233 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-225 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:149:6.61e-34:225:77:77- Raw architecture: Response_reg:4:3.33e-30:108:106:111#Trans_reg_C:149:6.61e-34:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032513585::NZ_JAWFMY010000011.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44239-46303Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7I47_10350RefSeq proteinWP_242858078.1
Context group ID
GCF_032513585::NZ_JAWFMY010000011.1::G00024Context members
E7I47_RS10355E7I47_RS10360
Partner locus tags
E7I47_RS10355E7I47_RS10360
Partner old locus tags
E7I47_10350E7I47_10355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242858078.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7I47_RS10355Primary locus identifier stored in the genes table.
Old locus tagE7I47_10350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWFMY010000011.1Sequence record reported by the local genomic context database.
Genomic interval44 239-44 940 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 239-46 303 ntGCF_032513585::NZ_JAWFMY010000011.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032513585::NZ_JAWFMY010000011.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWFMY010000011.1All displayed genes belong to this local TCS context.
Neighborhood span44 239-46 303 nt2 065 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 239 nt46 303 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E7I47_RS10355GCF_032513585#E7I47_RS10355
RROmpRCurrent focus
44 239-44 940 nt · Forward (+)
E7I47_RS10360GCF_032513585#E7I47_RS10360
HKClassic
44 930-46 303 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404795#ARB71_RS07825Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1085135
Simplified PFAM architecture for RROC_1085135
PFAM domain coverage: 182 / 233 aa (78.1%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-110] | Trans_reg_C[151-225]
- Domain count: 2
- Matched identifier: RROC_1085135
- Positioned domains: Response_reg 4-110 ; Response_reg 4-110 ; Trans_reg_C 151-225 ; Trans_reg_C 151-225
Cluster members and taxonomy
Representative gene: GCF_001404795#ARB71_RS07825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032513585
AssemblyASM3251358v1 · Contighaploid
Genome composition3 567 097 bp · 29,5% GCClostridium sp.
Signal transduction countsGenes 76 · HK 40 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key