1 HAMP#1
185-253 aa · 69 aa · 11.1% of protein
Raw token
HAMP:185:0.000000118:253:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7B23_RS12090
Histidine kinase, Classic
Clostridium sp. · GCF_032486475
ClassHKTypeClassicLength621 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_032486475#E7B23_RS12090Stable P2CS identifier used across views.
GenomeGCF_032486475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPPASHisKAHATPase_c
Protein length621 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage357 / 621 aa (57.5%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa621 aa
Domain-by-domain annotation4 items
2 PAS#2
270-376 aa · 107 aa · 17.2% of protein
Raw token
PAS:270:0.0000000416:376:110:1133 HisKA#3
385-452 aa · 68 aa · 11.0% of protein
Raw token
HisKA:385:1.32e-21:452:68:644 HATPase_c#4
498-610 aa · 113 aa · 18.2% of protein
Raw token
HATPase_c:498:1.63e-26:610:113:109- Raw architecture: HAMP:185:0.000000118:253:69:69#PAS:270:0.0000000416:376:110:113#HisKA:385:1.32e-21:452:68:64#HATPase_c:498:1.63e-26:610:113:109
- Domain description: 1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_032486475::NZ_JAWELC010000007.1::G00025
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span131560-137464Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7B23_12105RefSeq proteinWP_051195978.1
Context group ID
GCF_032486475::NZ_JAWELC010000007.1::G00025Context members
E7B23_RS12080E7B23_RS12085E7B23_RS12090E7B23_RS12095
Partner locus tags
E7B23_RS12080E7B23_RS12085E7B23_RS12090E7B23_RS12095
Partner old locus tags
E7B23_12095E7B23_12100E7B23_12105E7B23_12110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_051195978.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7B23_RS12090Primary locus identifier stored in the genes table.
Old locus tagE7B23_12105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWELC010000007.1Sequence record reported by the local genomic context database.
Genomic interval134 959-136 824 nt1 866 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span131 560-137 464 ntGCF_032486475::NZ_JAWELC010000007.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032486475::NZ_JAWELC010000007.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWELC010000007.1All displayed genes belong to this local TCS context.
Neighborhood span131 560-137 464 nt5 905 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
131 560 nt137 464 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
E7B23_RS12080GCF_032486475#E7B23_RS12080
HKClassic
131 560-134 277 nt · Forward (+)
E7B23_RS12085GCF_032486475#E7B23_RS12085
RROmpR
134 246-134 938 nt · Forward (+)
E7B23_RS12090GCF_032486475#E7B23_RS12090
HKClassicCurrent focus
134 959-136 824 nt · Forward (+)
E7B23_RS12095GCF_032486475#E7B23_RS12095
RRunclassified
136 802-137 464 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS18790Use this link to inspect the representative gene detail.
PFAM architecturePAS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0970093
Simplified PFAM architecture for HKOC_0970093
PFAM domain coverage: 256 / 621 aa (41.2%)
1 aa621 aa
PASHisKAHATPase_c
- Simplified architecture: PAS + HisKA + HATPase_c
- Raw architecture: PAS[269-344] | HisKA[385-452] | HATPase_c[499-610]
- Domain count: 3
- Matched identifier: HKOC_0970093
- Positioned domains: PAS 269-344 ; HisKA 385-452 ; HATPase_c 499-610
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS18790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032486475
AssemblyASM3248647v1 · Contighaploid
Genome composition3 547 046 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key