1 HisKA#1
182-249 aa · 68 aa · 16.7% of protein
Raw token
HisKA:182:0.00000000000000533:249:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7B23_RS00090
Histidine kinase, Classic
Clostridium sp. · GCF_032486475
ClassHKTypeClassicLength407 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032486475#E7B23_RS00090Stable P2CS identifier used across views.
GenomeGCF_032486475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length407 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 407 aa (43.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa407 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
294-401 aa · 108 aa · 26.5% of protein
Raw token
HATPase_c:294:2.26e-24:401:109:109- Raw architecture: HisKA:182:0.00000000000000533:249:68:64#HATPase_c:294:2.26e-24:401:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032486475::NZ_JAWELC010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15954-17863Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7B23_00090RefSeq proteinWP_055185127.1
Context group ID
GCF_032486475::NZ_JAWELC010000001.1::G00001Context members
E7B23_RS00085E7B23_RS00090
Partner locus tags
E7B23_RS00085E7B23_RS00090
Partner old locus tags
E7B23_00085E7B23_00090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055185127.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7B23_RS00090Primary locus identifier stored in the genes table.
Old locus tagE7B23_00090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWELC010000001.1Sequence record reported by the local genomic context database.
Genomic interval16 640-17 863 nt1 224 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 954-17 863 ntGCF_032486475::NZ_JAWELC010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032486475::NZ_JAWELC010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWELC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span15 954-17 863 nt1 910 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 954 nt17 863 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E7B23_RS00085GCF_032486475#E7B23_RS00085
RROmpR
15 954-16 637 nt · Forward (+)
E7B23_RS00090GCF_032486475#E7B23_RS00090
HKClassicCurrent focus
16 640-17 863 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406515#ARA43_RS14850Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2380612
Simplified PFAM architecture for HKOC_2380612
PFAM domain coverage: 175 / 407 aa (43.0%)
1 aa407 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[183-248] | HATPase_c[294-402]
- Domain count: 2
- Matched identifier: HKOC_2380612
- Positioned domains: HisKA 183-248 ; HATPase_c 294-402
Cluster members and taxonomy
Representative gene: GCF_001406515#ARA43_RS14850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032486475
AssemblyASM3248647v1 · Contighaploid
Genome composition3 547 046 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key