1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:1.12e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6947_RS08600
Response regulator OmpR family
Clostridium sp. · GCF_032473555
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032473555#E6947_RS08600Stable P2CS identifier used across views.
GenomeGCF_032473555Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-225 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:149:1.87e-29:225:77:77- Raw architecture: Response_reg:4:1.12e-34:113:111:111#Trans_reg_C:149:1.87e-29:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032473555::NZ_JAWEEI010000005.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span123075-125559Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6947_08595RefSeq proteinWP_055185082.1
Context group ID
GCF_032473555::NZ_JAWEEI010000005.1::G00021Context members
E6947_RS08595E6947_RS08600
Partner locus tags
E6947_RS08595E6947_RS08600
Partner old locus tags
E6947_08590E6947_08595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055185082.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3GHS1Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3GHS1_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6947_RS08600Primary locus identifier stored in the genes table.
Old locus tagE6947_08595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWEEI010000005.1Sequence record reported by the local genomic context database.
Genomic interval124 870-125 559 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span123 075-125 559 ntGCF_032473555::NZ_JAWEEI010000005.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032473555::NZ_JAWEEI010000005.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWEEI010000005.1All displayed genes belong to this local TCS context.
Neighborhood span123 075-125 559 nt2 485 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
123 075 nt125 559 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6947_RS08595GCF_032473555#E6947_RS08595
HKClassic
123 075-124 898 nt · Reverse (-)
E6947_RS08600GCF_032473555#E6947_RS08600
RROmpRCurrent focus
124 870-125 559 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404795#ARB71_RS12045Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1253446
Simplified PFAM architecture for RROC_1253446
PFAM domain coverage: 186 / 229 aa (81.2%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[149-224]
- Domain count: 2
- Matched identifier: RROC_1253446
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 149-224 ; Trans_reg_C 149-224
Cluster members and taxonomy
Representative gene: GCF_001404795#ARB71_RS12045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032473555
AssemblyASM3247355v1 · Contighaploid
Genome composition3 524 917 bp · 29,5% GCClostridium sp.
Signal transduction countsGenes 70 · HK 38 · RR 30CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key