1 PAS#1
308-415 aa · 108 aa · 17.2% of protein
Raw token
PAS:308:0.00000109:415:113:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6947_RS05015
Histidine kinase, Classic
Clostridium sp. · GCF_032473555
ClassHKTypeClassicLength629 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032473555#E6947_RS05015Stable P2CS identifier used across views.
GenomeGCF_032473555Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_c
Protein length629 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 629 aa (39.0%)Merged over positioned domains only.
Domain description1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa629 aa
Domain-by-domain annotation3 items
2 HisKA#2
437-507 aa · 71 aa · 11.3% of protein
Raw token
HisKA:437:0.00000000000155:507:71:643 HATPase_c#3
554-619 aa · 66 aa · 10.5% of protein
Raw token
HATPase_c:554:4.31e-16:619:66:109- Raw architecture: PAS:308:0.00000109:415:113:113#HisKA:437:0.00000000000155:507:71:64#HATPase_c:554:4.31e-16:619:66:109
- Domain description: 1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032473555::NZ_JAWEEI010000003.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span160856-162745Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6947_05010RefSeq proteinWP_316092488.1
Context group ID
GCF_032473555::NZ_JAWEEI010000003.1::G00010Context members
E6947_RS05015
Partner locus tags
E6947_RS05015
Partner old locus tags
E6947_05010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_316092488.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6947_RS05015Primary locus identifier stored in the genes table.
Old locus tagE6947_05010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWEEI010000003.1Sequence record reported by the local genomic context database.
Genomic interval160 856-162 745 nt1 890 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span160 856-162 745 ntGCF_032473555::NZ_JAWEEI010000003.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032473555::NZ_JAWEEI010000003.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWEEI010000003.1All displayed genes belong to this local TCS context.
Neighborhood span160 856-162 745 nt1 890 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
160 856 nt162 745 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E6947_RS05015GCF_032473555#E6947_RS05015
HKClassicCurrent focus
160 856-162 745 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032473555#E6947_RS05015The current gene is the representative for this cluster.
PFAM architecturePAS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0952227
Simplified PFAM architecture for HKOC_0952227
PFAM domain coverage: 237 / 629 aa (37.7%)
1 aa629 aa
PASHisKAHATPase_c
- Simplified architecture: PAS + HisKA + HATPase_c
- Raw architecture: PAS[309-410] | HisKA[437-507] | HATPase_c[554-617]
- Domain count: 3
- Matched identifier: HKOC_0952227
- Positioned domains: PAS 309-410 ; HisKA 437-507 ; HATPase_c 554-617
Cluster members and taxonomy
Representative gene: GCF_032473555#E6947_RS05015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032473555
AssemblyASM3247355v1 · Contighaploid
Genome composition3 524 917 bp · 29,5% GCClostridium sp.
Signal transduction countsGenes 70 · HK 38 · RR 30CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key