1 HAMP#1
168-205 aa · 38 aa · 8.7% of protein
Raw token
HAMP:168:0.0000141:205:38:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6947_RS03125
Histidine kinase, Classic
Clostridium sp. · GCF_032473555
ClassHKTypeClassicLength436 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032473555#E6947_RS03125Stable P2CS identifier used across views.
GenomeGCF_032473555Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length436 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage210 / 436 aa (48.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa436 aa
Domain-by-domain annotation3 items
2 HisKA#2
208-273 aa · 66 aa · 15.1% of protein
Raw token
HisKA:208:4.05e-17:273:66:643 HATPase_c#3
320-425 aa · 106 aa · 24.3% of protein
Raw token
HATPase_c:320:2.4e-32:425:107:109- Raw architecture: HAMP:168:0.0000141:205:38:69#HisKA:208:4.05e-17:273:66:64#HATPase_c:320:2.4e-32:425:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032473555::NZ_JAWEEI010000002.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span472-2478Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6947_03120RefSeq proteinWP_316092402.1
Context group ID
GCF_032473555::NZ_JAWEEI010000002.1::G00006Context members
E6947_RS03120E6947_RS03125
Partner locus tags
E6947_RS03120E6947_RS03125
Partner old locus tags
E6947_03115E6947_03120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_316092402.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6947_RS03125Primary locus identifier stored in the genes table.
Old locus tagE6947_03120Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWEEI010000002.1Sequence record reported by the local genomic context database.
Genomic interval1 168-2 478 nt1 311 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span472-2 478 ntGCF_032473555::NZ_JAWEEI010000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032473555::NZ_JAWEEI010000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWEEI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span472-2 478 nt2 007 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
472 nt2 478 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6947_RS03120GCF_032473555#E6947_RS03120
RROmpR
472-1 164 nt · Forward (+)
E6947_RS03125GCF_032473555#E6947_RS03125
HKClassicCurrent focus
1 168-2 478 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032473555#E6947_RS03125The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2118573
Simplified PFAM architecture for HKOC_2118573
PFAM domain coverage: 172 / 436 aa (39.4%)
1 aa436 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[208-273] | HATPase_c[320-425]
- Domain count: 2
- Matched identifier: HKOC_2118573
- Positioned domains: HisKA 208-273 ; HATPase_c 320-425
Cluster members and taxonomy
Representative gene: GCF_032473555#E6947_RS03125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032473555
AssemblyASM3247355v1 · Contighaploid
Genome composition3 524 917 bp · 29,5% GCClostridium sp.
Signal transduction countsGenes 70 · HK 38 · RR 30CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key