1 MASE3#1
49-246 aa · 198 aa · 29.4% of protein
Raw token
MASE3:49:0.0000000145:246:219:226P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6947_RS02280
Histidine kinase, Classic
Clostridium sp. · GCF_032473555
ClassHKTypeClassicLength673 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032473555#E6947_RS02280Stable P2CS identifier used across views.
GenomeGCF_032473555Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
MASE3HisKAHATPase_c
Protein length673 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage375 / 673 aa (55.7%)Merged over positioned domains only.
Domain description1 MASE3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa673 aa
Domain-by-domain annotation3 items
2 HisKA#2
421-488 aa · 68 aa · 10.1% of protein
Raw token
HisKA:421:0.000000000963:488:68:643 HATPase_c#3
535-643 aa · 109 aa · 16.2% of protein
Raw token
HATPase_c:535:6.88e-24:643:109:109- Raw architecture: MASE3:49:0.0000000145:246:219:226#HisKA:421:0.000000000963:488:68:64#HATPase_c:535:6.88e-24:643:109:109
- Domain description: 1 MASE3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032473555::NZ_JAWEEI010000001.1::G00004
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span493146-497064Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6947_02275RefSeq proteinWP_027098241.1
Context group ID
GCF_032473555::NZ_JAWEEI010000001.1::G00004Context members
E6947_RS02275E6947_RS02280
Partner locus tags
E6947_RS02275E6947_RS02280
Partner old locus tags
E6947_02270E6947_02275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027098241.1Primary protein accession used for annex mappings.
UniProt accessionA0A174WX35Primary UniProt accession resolved in the annex database.
UniProt IDA0A174WX35_9CLOTDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6947_RS02280Primary locus identifier stored in the genes table.
Old locus tagE6947_02275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWEEI010000001.1Sequence record reported by the local genomic context database.
Genomic interval495 043-497 064 nt2 022 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span493 146-497 064 ntGCF_032473555::NZ_JAWEEI010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032473555::NZ_JAWEEI010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWEEI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span493 146-497 064 nt3 919 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
493 146 nt497 064 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6947_RS02275GCF_032473555#E6947_RS02275
HKClassic
493 146-495 038 nt · Forward (+)
E6947_RS02280GCF_032473555#E6947_RS02280
HKClassicCurrent focus
495 043-497 064 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0108730Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0836228
Simplified PFAM architecture for HKOC_0836228
PFAM domain coverage: 178 / 673 aa (26.4%)
1 aa673 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[421-488] | HATPase_c[535-644]
- Domain count: 2
- Matched identifier: HKOC_0836228
- Positioned domains: HisKA 421-488 ; HATPase_c 535-644
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0108730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032473555
AssemblyASM3247355v1 · Contighaploid
Genome composition3 524 917 bp · 29,5% GCClostridium sp.
Signal transduction countsGenes 70 · HK 38 · RR 30CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key