1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:6.38e-42:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS18570
Response regulator OmpR family
Blautia faecis · GCF_032142815
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032142815#RO865_RS18570Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:7.05e-38:227:77:77- Raw architecture: Response_reg:5:6.38e-42:114:111:111#Trans_reg_C:151:7.05e-38:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032142815::NZ_JAVSND010000015.1::G00061
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54923-57043Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_18580RefSeq proteinWP_173734913.1
Context group ID
GCF_032142815::NZ_JAVSND010000015.1::G00061Context members
RO865_RS18565RO865_RS18570
Partner locus tags
RO865_RS18565RO865_RS18570
Partner old locus tags
RO865_18575RO865_18580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173734913.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H4W8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H4W8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS18570Primary locus identifier stored in the genes table.
Old locus tagRO865_18580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000015.1Sequence record reported by the local genomic context database.
Genomic interval56 354-57 043 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 923-57 043 ntGCF_032142815::NZ_JAVSND010000015.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000015.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000015.1All displayed genes belong to this local TCS context.
Neighborhood span54 923-57 043 nt2 121 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 923 nt57 043 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RO865_RS18565GCF_032142815#RO865_RS18565
HKClassic
54 923-56 350 nt · Reverse (-)
RO865_RS18570GCF_032142815#RO865_RS18570
RROmpRCurrent focus
56 354-57 043 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302345#G5B17_RS07260Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1268106
Simplified PFAM architecture for RROC_1268106
PFAM domain coverage: 186 / 229 aa (81.2%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[151-227]
- Domain count: 2
- Matched identifier: RROC_1268106
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 151-227
Cluster members and taxonomy
Representative gene: GCF_013302345#G5B17_RS07260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key