1 Response_reg#1
4-113 aa · 110 aa · 49.5% of protein
Raw token
Response_reg:4:4.15e-26:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS11710
Response regulator OmpR family
Blautia faecis · GCF_032142815
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032142815#RO865_RS11710Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 222 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 33.8% of protein
Raw token
Trans_reg_C:147:7.42e-27:221:76:77- Raw architecture: Response_reg:4:4.15e-26:113:111:111#Trans_reg_C:147:7.42e-27:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032142815::NZ_JAVSND010000007.1::G00047
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span32437-33105Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_11710RefSeq proteinWP_118578126.1
Context group ID
GCF_032142815::NZ_JAVSND010000007.1::G00047Context members
RO865_RS11710
Partner locus tags
RO865_RS11710
Partner old locus tags
RO865_11710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118578126.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H300Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H300_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS11710Primary locus identifier stored in the genes table.
Old locus tagRO865_11710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000007.1Sequence record reported by the local genomic context database.
Genomic interval32 437-33 105 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 437-33 105 ntGCF_032142815::NZ_JAVSND010000007.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000007.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000007.1All displayed genes belong to this local TCS context.
Neighborhood span32 437-33 105 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 437 nt33 105 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RO865_RS11710GCF_032142815#RO865_RS11710
RROmpRCurrent focus
32 437-33 105 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS03680Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1646924
Simplified PFAM architecture for RROC_1646924
PFAM domain coverage: 182 / 222 aa (82.0%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[150-221]
- Domain count: 2
- Matched identifier: RROC_1646924
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 150-221 ; Trans_reg_C 150-221
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS03680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key