1 Response_reg#1
4-108 aa · 105 aa · 44.5% of protein
Raw token
Response_reg:4:7.5e-22:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS10400
Response regulator LytTR family
Blautia faecis · GCF_032142815
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032142815#RO865_RS10400Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 236 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-228 aa · 89 aa · 37.7% of protein
Raw token
LytTR:140:6.49e-17:228:95:98- Raw architecture: Response_reg:4:7.5e-22:108:108:111#LytTR:140:6.49e-17:228:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032142815::NZ_JAVSND010000005.1::G00041
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span198853-199563Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_10400RefSeq proteinWP_195477246.1
Context group ID
GCF_032142815::NZ_JAVSND010000005.1::G00041Context members
RO865_RS10400
Partner locus tags
RO865_RS10400
Partner old locus tags
RO865_10400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195477246.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS10400Primary locus identifier stored in the genes table.
Old locus tagRO865_10400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000005.1Sequence record reported by the local genomic context database.
Genomic interval198 853-199 563 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span198 853-199 563 ntGCF_032142815::NZ_JAVSND010000005.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000005.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000005.1All displayed genes belong to this local TCS context.
Neighborhood span198 853-199 563 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
198 853 nt199 563 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RO865_RS10400GCF_032142815#RO865_RS10400
RRLytTRCurrent focus
198 853-199 563 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015554365#I2F55_RS02000Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1000538
Simplified PFAM architecture for RROC_1000538
PFAM domain coverage: 192 / 236 aa (81.4%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[141-227]
- Domain count: 2
- Matched identifier: RROC_1000538
- Positioned domains: Response_reg 4-108 ; LytTR 141-227
Cluster members and taxonomy
Representative gene: GCF_015554365#I2F55_RS02000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key