1 Response_reg#1
5-117 aa · 113 aa · 45.7% of protein
Raw token
Response_reg:5:3.96e-32:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS10265
Response regulator, unclassified
Blautia faecis · GCF_032142815
ClassRRTypeunclassifiedLength247 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032142815#RO865_RS10265Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage189 / 247 aa (76.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa247 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
155-195 aa · 41 aa · 16.6% of protein
Raw token
HTH_AraC:155:0.0000000198:195:41:423 HTH_AraC#3
212-246 aa · 35 aa · 14.2% of protein
Raw token
HTH_AraC:212:0.00000000191:246:35:42- Raw architecture: Response_reg:5:3.96e-32:117:113:111#HTH_AraC:155:0.0000000198:195:41:42#HTH_AraC:212:0.00000000191:246:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032142815::NZ_JAVSND010000005.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span166378-168972Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_10265RefSeq proteinWP_173769864.1
Context group ID
GCF_032142815::NZ_JAVSND010000005.1::G00039Context members
RO865_RS10265RO865_RS10270
Partner locus tags
RO865_RS10265RO865_RS10270
Partner old locus tags
RO865_10265RO865_10270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173769864.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H952Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H952_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS10265Primary locus identifier stored in the genes table.
Old locus tagRO865_10265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000005.1Sequence record reported by the local genomic context database.
Genomic interval166 378-167 121 nt744 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span166 378-168 972 ntGCF_032142815::NZ_JAVSND010000005.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000005.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000005.1All displayed genes belong to this local TCS context.
Neighborhood span166 378-168 972 nt2 595 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
166 378 nt168 972 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RO865_RS10265GCF_032142815#RO865_RS10265
RRunclassifiedCurrent focus
166 378-167 121 nt · Reverse (-)
RO865_RS10270GCF_032142815#RO865_RS10270
HKClassic
167 143-168 972 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302345#G5B17_RS10660Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0761140
Simplified PFAM architecture for RROC_0761140
PFAM domain coverage: 192 / 247 aa (77.7%)
1 aa247 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-117] | HTH_18[168-246]
- Domain count: 2
- Matched identifier: RROC_0761140
- Positioned domains: Response_reg 5-117 ; HTH_18 168-246
Cluster members and taxonomy
Representative gene: GCF_013302345#G5B17_RS10660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key