1 Response_reg#1
6-115 aa · 110 aa · 46.0% of protein
Raw token
Response_reg:6:6.53e-39:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS08625
Response regulator OmpR family
Blautia faecis · GCF_032142815
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032142815#RO865_RS08625Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 239 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.2% of protein
Raw token
Trans_reg_C:153:2.49e-25:229:77:77- Raw architecture: Response_reg:6:6.53e-39:115:111:111#Trans_reg_C:153:2.49e-25:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032142815::NZ_JAVSND010000004.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span199832-202181Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_08625RefSeq proteinWP_173771418.1
Context group ID
GCF_032142815::NZ_JAVSND010000004.1::G00030Context members
RO865_RS08625RO865_RS08630
Partner locus tags
RO865_RS08625RO865_RS08630
Partner old locus tags
RO865_08625RO865_08630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173771418.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS08625Primary locus identifier stored in the genes table.
Old locus tagRO865_08625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000004.1Sequence record reported by the local genomic context database.
Genomic interval199 832-200 551 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span199 832-202 181 ntGCF_032142815::NZ_JAVSND010000004.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000004.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000004.1All displayed genes belong to this local TCS context.
Neighborhood span199 832-202 181 nt2 350 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
199 832 nt202 181 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RO865_RS08625GCF_032142815#RO865_RS08625
RROmpRCurrent focus
199 832-200 551 nt · Reverse (-)
RO865_RS08630GCF_032142815#RO865_RS08630
HKClassic
200 544-202 181 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302375#G5A01_RS09435Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0916461
Simplified PFAM architecture for RROC_0916461
PFAM domain coverage: 187 / 239 aa (78.2%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_0916461
- Positioned domains: Response_reg 6-115 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_013302375#G5A01_RS09435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key