1 Response_reg#1
4-115 aa · 112 aa · 28.6% of protein
Raw token
Response_reg:4:2.29e-31:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS08535
Response regulator, unclassified
Blautia faecis · GCF_032142815
ClassRRTypeunclassifiedLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032142815#RO865_RS08535Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 392 aa (49.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
297-338 aa · 42 aa · 10.7% of protein
Raw token
HTH_AraC:297:0.00000000283:338:42:423 HTH_AraC#3
349-386 aa · 38 aa · 9.7% of protein
Raw token
HTH_AraC:349:0.000000125:386:41:42- Raw architecture: Response_reg:4:2.29e-31:115:112:111#HTH_AraC:297:0.00000000283:338:42:42#HTH_AraC:349:0.000000125:386:41:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032142815::NZ_JAVSND010000004.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span181331-184392Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_08535RefSeq proteinWP_227202129.1
Context group ID
GCF_032142815::NZ_JAVSND010000004.1::G00029Context members
RO865_RS08530RO865_RS08535
Partner locus tags
RO865_RS08530RO865_RS08535
Partner old locus tags
RO865_08530RO865_08535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227202129.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS08535Primary locus identifier stored in the genes table.
Old locus tagRO865_08535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000004.1Sequence record reported by the local genomic context database.
Genomic interval183 214-184 392 nt1 179 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span181 331-184 392 ntGCF_032142815::NZ_JAVSND010000004.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000004.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000004.1All displayed genes belong to this local TCS context.
Neighborhood span181 331-184 392 nt3 062 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
181 331 nt184 392 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RO865_RS08530GCF_032142815#RO865_RS08530
HKClassic
181 331-183 100 nt · Forward (+)
RO865_RS08535GCF_032142815#RO865_RS08535
RRunclassifiedCurrent focus
183 214-184 392 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020564165#LI320_RS08810Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0402944
Simplified PFAM architecture for RROC_0402944
PFAM domain coverage: 189 / 392 aa (48.2%)
1 aa392 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-115] | HTH_AraC[297-338] | HTH_AraC[352-386]
- Domain count: 3
- Matched identifier: RROC_0402944
- Positioned domains: Response_reg 4-115 ; HTH_AraC 297-338 ; HTH_AraC 352-386
Cluster members and taxonomy
Representative gene: GCF_020564165#LI320_RS08810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key