1 PAS_3#1
207-291 aa · 85 aa · 12.3% of protein
Raw token
PAS_3:207:0.00000000000000131:291:88:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS07960
Histidine kinase, Hybrid
Blautia faecis · GCF_032142815
ClassHKTypeHybridLength689 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032142815#RO865_RS07960Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length689 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage380 / 689 aa (55.2%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa689 aa
Domain-by-domain annotation4 items
2 HisKA#2
316-382 aa · 67 aa · 9.7% of protein
Raw token
HisKA:316:3.06e-16:382:67:643 HATPase_c#3
431-547 aa · 117 aa · 17.0% of protein
Raw token
HATPase_c:431:6.36e-27:547:117:1094 Response_reg#4
570-680 aa · 111 aa · 16.1% of protein
Raw token
Response_reg:570:5.97e-28:680:111:111- Raw architecture: PAS_3:207:0.00000000000000131:291:88:89#HisKA:316:3.06e-16:382:67:64#HATPase_c:431:6.36e-27:547:117:109#Response_reg:570:5.97e-28:680:111:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032142815::NZ_JAVSND010000004.1::G00025
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span60027-62096Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_07960RefSeq proteinWP_215660910.1
Context group ID
GCF_032142815::NZ_JAVSND010000004.1::G00025Context members
RO865_RS07960
Partner locus tags
RO865_RS07960
Partner old locus tags
RO865_07960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215660910.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS07960Primary locus identifier stored in the genes table.
Old locus tagRO865_07960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000004.1Sequence record reported by the local genomic context database.
Genomic interval60 027-62 096 nt2 070 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 027-62 096 ntGCF_032142815::NZ_JAVSND010000004.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000004.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000004.1All displayed genes belong to this local TCS context.
Neighborhood span60 027-62 096 nt2 070 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 027 nt62 096 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RO865_RS07960GCF_032142815#RO865_RS07960
HKHybridCurrent focus
60 027-62 096 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018785625#GPK86_RS13650Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0795051
Simplified PFAM architecture for HKOC_0795051
PFAM domain coverage: 381 / 689 aa (55.3%)
1 aa689 aa
PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[207-291] | HisKA[316-382] | HATPase_c[432-547] | Response_reg[570-682]
- Domain count: 4
- Matched identifier: HKOC_0795051
- Positioned domains: PAS_3 207-291 ; HisKA 316-382 ; HATPase_c 432-547 ; Response_reg 570-682
Cluster members and taxonomy
Representative gene: GCF_018785625#GPK86_RS13650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key